GgaEX1010617 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20141924-20144230:-
Coord C1 exon
chr7:20144148-20144230
Coord A exon
chr7:20143450-20143515
Coord C2 exon
chr7:20141924-20141973
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTACACCCTTTATTTCCAGGTA
3' ss Score
10.1
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACAAATGAAAATGAGACCTGGAGAAGTCCTTATAGACTGCCTGGAGTCCATTGAAGATACCAAAGGAAACAATGGAGACAGAG
Seq A exon
GTAGACTGCTTGTGACAAACTTAAGGATTATTTGGCGCTCATTGTCATTGCCCAGAGTTAATCTCT
Seq C2 exon
CTGTTGGTTACAACTGCATTATAAATATAACTACAAGAACTGCCAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846-'5-5,'5-3,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(59.6=100)
A:
PF072896=DUF1448=FE(6.6=100)
C2:
PF072896=DUF1448=FE(4.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAATGAGACCTGGAGAAGTCC
R:
TGAGTTGGCAGTTCTTGTAGT
Band lengths:
128-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]