BtaEX0005342 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26815960-26818672:-
Coord C1 exon
chr2:26818590-26818672
Coord A exon
chr2:26816830-26816895
Coord C2 exon
chr2:26815960-26816009
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTTTGCTTTTAGGCA
3' ss Score
9.85
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ACAAATGAAAACAAGACCTGGAGAAGTCCTTATTGATTGTTTAGATTCAGTTGAAGACACCAAAGGAAATAATGGGGATAGAG
Seq A exon
GCAGACTCTTAGTAACAAATTTAAGAATTGTCTGGCACTCTTTGGCATTACCCAGAGTCAATCTTT
Seq C2 exon
CTATTGGTTACAACTGCATATTGAATATTACAACAAGGACTGCTAATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(8.4=100)
A:
PF072896=DUF1448=FE(6.6=100)
C2:
PF072896=DUF1448=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGAAAACAAGACCTGGAGA
R:
AGCAGTCCTTGTTGTAATATTCAAT
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development