MmuEX0007740 @ mm9
Exon Skipping
Gene
ENSMUSG00000063145 | Bbs5
Description
Bardet-Biedl syndrome 5 (human) [Source:MGI Symbol;Acc:MGI:1919819]
Coordinates
chr2:69487079-69492169:+
Coord C1 exon
chr2:69487079-69487161
Coord A exon
chr2:69490839-69490904
Coord C2 exon
chr2:69492120-69492169
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTGCTTTGCTTCTAGGTA
3' ss Score
8.95
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ACAGATGAAAACAAGACCCGGGGAAGTCCTCATTGACTGTTTAGATTCCATTGAAGACACAAAAGGAAACAATGGAGACAGAG
Seq A exon
GTAGACTCTTAGTCACAAACTTAAGGATCATCTGGCATTCCTTGGCATTGCCCAGAGTCAATCTTT
Seq C2 exon
CTATTGGTTACAACTGCATATTGAATATCACAACAAGAACTGCTAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063145-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(13.8=100)
A:
PF072896=DUF1448=FE(10.8=100)
C2:
PF072896=DUF1448=FE(19.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACAAGACCCGGGGAAGT
R:
AGAGTTAGCAGTTCTTGTTGTGA
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: