RnoINT0024918 @ rn6
Intron Retention
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55894743-55896110:+
Coord C1 exon
chr3:55894743-55894870
Coord A exon
chr3:55894871-55895974
Coord C2 exon
chr3:55895975-55896110
Length
1104 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TCGTTTATTCTCTTTTGTAGAGC
3' ss Score
9.31
Exon sequences
Seq C1 exon
AAACTCCGAGGCCAGACGGAAGCTCTTTATATATTAACAAAATGCAACACCACCCGGTTTGAGTTTATATTCACAAATCTGGTTCCCGGGAGCCCCAGACTTTTTACTTCTGTGATTGCAGTGCACAG
Seq A exon
GTACAATGGCAGTTTTGACTGTATCCAGTTATTTTGATGTAATGGTGTAAAGGGTAAAATCTTACAGACGTCTAACAGTATCTTCTAGTTACAAATATCACAACGATATTTAAAATAATATACTTCATTATCAGATAAGAAGCAGCTTGAAAGAATTTATAAAGCACACTTGTAGTTCCACCACTCTGGAAGATAAAGCAGGAGGATTAGGGTGTCTGGGCTATCCTGGGCTGCATAACACCACCCTCTATAAAATATTAGAGTACTGAAAAGATTCTACTAAATTAGCTATGTAAAAATTTTTAAGTAGTTAGTTTAAAAGAATTTTAGAGCAGACATTCAAGTGTTTTTACCTAAATAATTTTTCTTTATAGCTATCTCTGTTTGCTCAGATTATTAATAATGCTTCTCTGACCACTTTTCATGGCCATGCACCAGAACCATAGCTCTCTTTGTTTGACTTAAGGAGTGACCAAGGTGAGAGAGGGAGCACATAGTAAATTCAAGGCTAATATCTAATTTTTTAAAAATACAATAAAGCCAGGCACAACTTTAATCCCAGCACTTGGGAGGCAGAGGCAACCTGATCTCTGTGAGTTTGAAGCCAGCCTAGTCTCTGTTGCACAGAGAAACCCATCAGGGTCACACCACCGTGACAGAAGACTGCAGTCGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAGAAAAAAAAAAAGACTGCAGTCACACATCTTTACTGAAAAGAGAACAATCTTTTTTGTTCTTTTGGGGTTTGCTTTTGCTTTTGCTTTTTGAAGCAGCCCCACTCCATAGCCCTGACTGGCCTAGAACTCAGTATATTGTCTAGGATGGCCTCAAAATGTCAACAATTCTCCTGCCTCAGCCTCCCAAGTGATGAGATTACAGGCCTGTGCTACCACAATTTACCGTGATAATTGAGTCATGTCCAGAGCATTAACAGCCATGGACTTTAGCAGATGAGTAAACACAGCCTAACAAACCACATTTTCCATTTGGAGTGACTGGTCTCTCGTTTATTCTCTTTTGTAG
Seq C2 exon
AGCCTATGAAACATCTAAAATGTACCGTGATTTTAAGCTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAGGTTATTACCACAGGAACATGTGTATGATAAGATCAATGGTGTGTGGAATTTATCCAGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127:ENSRNOT00000009396:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(22.7=100),PF036948=Erg28=PU(16.4=27.9)
A:
NA
C2:
PF072896=DUF1448=FE(24.3=100),PF036948=Erg28=FE(61.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCCGAGGCCAGACG
R:
GGATAAATTCCACACACCATTGA
Band lengths:
255-1359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]