DreEX6038507 @ danRer10
Exon Skipping
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48594850-48599074:-
Coord C1 exon
chr9:48598867-48599074
Coord A exon
chr9:48595261-48595310
Coord C2 exon
chr9:48594850-48594977
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTGTTTATTAACAGCTG
3' ss Score
9.33
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTACTAGCTGATGTTACCGTGGTGACGTGACGACGCCTCAGCCTACGCTAAATCGTCTTAGGAAGAGATTGAACGCTTTTCAGCGCGCTTCAATAGTTGAAAATCTATACTTGGGTTTAATTCGACAATATACGCAGACAGTGATCATGGCGTCGGTGTTGGACGCGCTCTGGGAGGACAGAGACGTGAGATTTGACATCACTGCACA
Seq A exon
CTGTGGGATACAACTGCATTATTAATATCACCACAAGGACTGCAAATTCT
Seq C2 exon
AAACTAAGAGGTCAGACTGAAGCGCTTTACATATTAACTAAATCTAATAACACTAGATTTGAGTTCATCTTCACGAATGTGGTCCCAGGAAGTCCGAGACTGTTTACATCTGTCATTGCTGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827-'0-6,'0-5,3-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=PU(4.2=66.7)
A:
PF072896=DUF1448=FE(4.8=100)
C2:
PF072896=DUF1448=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGACAGAGACGTGAGAT
R:
AACAGTCTCGGACTTCCTGGG
Band lengths:
141-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]