GgaEX0014564 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:20140063-20141973:-
Coord C1 exon
chr7:20141924-20141973
Coord A exon
chr7:20141033-20141160
Coord C2 exon
chr7:20140063-20140198
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTCAAATTTTCCTTACAGAAA
3' ss Score
9.71
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGTTGGTTACAACTGCATTATAAATATAACTACAAGAACTGCCAACTCA
Seq A exon
AAATTACGGGGACAGACAGAAGCTCTGTATATATTGACTAAATGTAATAATACACGATTTGAGTTCATATTTACCAATGTTGTTCCTGGGAGTCCCAGACTCTTCACTTCAGTTATTGCTGTGCACAG
Seq C2 exon
AGCTTATGAAACTTCGAAAATGTATCGTGATCTGAAGCTGAGAAGTGCATTGATTCAGAACAAGCAACTGAGGCTGTTGCCACAAGAACAAATATATGATAAAATCAATGGAGTGTGGAATTTATCAAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(4.8=100)
A:
PF072896=DUF1448=FE(12.5=100)
C2:
PF072896=DUF1448=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATATAACTACAAGAACTGCCAACTCA
R:
CTGGTCACTTGATAAATTCCACACT
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event