BtaINT0025168 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26807837-26811883:-
Coord C1 exon
chr2:26811788-26811883
Coord A exon
chr2:26807900-26811787
Coord C2 exon
chr2:26807837-26807899
Length
3888 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
CTTTTTCATTTTACATCTAGCGG
3' ss Score
6.79
Exon sequences
Seq C1 exon
GGAAATTTAGGAACCTTTTTTATTACCAATGTGAGAATCGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGTATACCATATCTGCAAATT
Seq A exon
GTAAGTGCATGTATTTCGATGACCTTATTTTAATGTAGAATAAATAATTTCTATTCAACAGTTAATAGGACATTGGGGATTAGATGAGTTCTTTCTTCCCCTTTTTAAGTGACAGCAGTTTAGCTGAGAGCATACTTTTTAAATGTTGATCATCAGAAAAGACCCAATTGTATTTACAATCAAGAGAAACAGCACCATTATCAGCTTACATTTCTTTTTTCATTACGAGAAAAATATACTGGAGTCTGGGTTTCCCAGGTGGTTCAGTGGTAAAGAATCCACCTGCCAATGCAGGAGGCGTAGGTTCAACCCCTGAGTCGGGAAGATCCCCTGGAGAAGGCTACTCACTCCAATATTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTCGTATACTACAATCCACAGGGTTGTAAGAGAGTTGGACACGACTTAGCAACTGAGCACGCATGCACACATACTGGATTCTAAAAATTTAAATAGCACAGATGCAGAGGATAAACTTATGGTTATTGGAAGGTAAGGGGGAAGGATAAATTGGAAAATTGGGATTGACATATACACACTAATGTATATGAAGTGAAATGAAGTGAAAGTCGCTCAGTCGTGTCCAGTTCTGTGACCCCATTGACTATATAGTCATGAAATTCTCCAGGCCCGAATACTGGAGTGGGTAGCTTTGCCCTGCTCCAGGTGATTTTCCCAATCCAGGGATCGAACCCAGGTCCCCCACATTGCAGGTGGATTCTTTACCGGCTGAGTCACAAAGGAAGCCCAAGAATACTGGAGTGAGTAGCCTATTCCTTCTCCAGCGGATCTTCCCAACCCAGAAATTGAACCATGGTCTCCTGCATTGCAGGCAGATTCTTTTACCAGCTGAGCTATCAGGGAAGCCCCTAATGTATATAAAATAAATAAGGATCTACTGTATAGCACAGAGAACTCTACTCAGTACTCTGTAATGGTCTGTATGGGAAGGAAATCTGGAGAAGAGTGGATATATGTATTTGTATGGCAGATTCACTTTGCTGTGTATCTGAAATTGGCACAACCTTGTAAATTAAGTATACCTCAGTAAATTTTTAATTTTAAATAATTATCACACAGATTAAGGTGATTTTTCTTAGATTTTATTCAAAGCACTTTCCAGGGCAGCTTATGGAAAAACTTGAACAACCTTTTTGGCCAACCCAATATATACTGTTCTTTGGCATGGCTCACTGACTCACATACTTTATGGCTTGCTATTTTCTGCTCAAAACCTTTTAAAGCCAGGATAGATTCATTGATTCTGTGAATGAAGTGTTTTTATTGTATTTAGATACAGCCTGTAGTATAAGTTGGATTCATACCACAGGTTTGGTGAAAGGAATCAAGATGACTTTTATTGATAATGATTTTAGCTTAAATTAAATTAAAGCTGTTAGAATTTAGAATAAGAACTAATTACATCTGAGACCAGTTTGTTTTGGGAGTAGATAAAAATGATTCTTTTCACTTTGCACTGCTTTAATGGTAAGTGTGTGATTCAGTGAAACAAATTGTAAACTCCAATAAGCTGAAGGATTTCATTTTATGTATTTAAAAGACTGCTCATCAGATCCTAGTGCAAATTAGATGAAACATAAAAATAGTTAATCAAAATCTTGTGAGGTTATCCTATGATGGTCACCCTTATTGTAGAATATAAGTAGTCTTAAGACTAAACAGTTTCATTAATAAATGTTTATTGAGTATTAGATGCAATGTATGAGATACCTGGAAAGTTTTATTTTTAAGAAAGATTTCTTGACCTATGAGAAAGATAATTATTTGCAAAATATTCCCAAGCCTATCTTTTGCTAAGTTGTTTGGTATGTGAATTACTTTAAAATATCTGATCATTCATTTGCCAAATAGTGAGCACTTACCCTGTGCTCAGTAATGAAAGTCATGAACCAGTACGCAGTTTCTGCCTTTAAGGAGCTTCCAGTCTGGTGGAGAAAAGCAATACATTAAACAAAAAAATCTAGAATCTGACAGGAAGAAAATTATTTCTGGTCATCTAAAGAAACATAAGAATTTATATCATAGCTAGGAAAATGTGAGAGTCTACACAGGCATTTGATATAATTGATGTTAGTATTGTTCATTGCTGTTTTATATTGTATTTACATATGCTATAGCTTGCTCAGCCTCTATTACGCTGAAAAATTAATTCCTGAGTAGTAAACAACCATGTGCTTTCTGTTCTTCAAGTAGTATACTTTTTGTTTTTTAAGAATACAGTTGCCAAATATGGACTCTGGAATAAATTCAACCTGGCCTAAACAACTTGCAATCTGATACTGCTTGTCTGTCACTGGGGCAATCATTTCCTAACTTCAGCTCCATGCCTCAGCCATTGCCCTGACTCCACACCTATCAGTTCAATTGCTCAGTCGTGTCCAACCCTTTGCGACCCCATGGACCGCAGCACGCCAGGCTTCCCTGTCCATCACCAACTCCCGGAGCTTACTCAAACTCATGTCCATCAAGTTGGTGATGGCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCCTCAATCGTTCCCAGCATCAGGGTCTTTTCCATTGAGTCAGTTCTTCACATTAGCTGGCCAAAGGATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAGTGAATATTCAGGACTGATTTCCTTTAGGATTAACTGGTTGGATCTTGCAGTCCAAGAGACTCTCAAGAGTATTCTCCAGCCCCACAGTTCAAAAGCATCAATTCTTCAGTGCTGAGCTTTCTTTATGCTATAACCAACCTAGACAGCATATTAAAAAGCAGAGATGTTACTTTGCCAACAAAGGTCCATCTAGTCAAAGCTATGATTTTTCCACTCCTATAGATGTATATATATATACATATCTTCTTGCCAGTTTCTTTCTTGACAGCCTCTGTCAACCTCAGTCACCTGGTTAGATTAGCTGTTCACAACCAGGATGCCACTGTTCTATGCTTAACCAGGACTATGTATACTCCTGGCAGGGTATGAAGTAATCTAAATGGAAGGCGAGGTTTTCATTACAATTACCATTTAGTCTGTCTGTCTCTCTCTTTTTCTTTCTCACCTTACAATACCCATCTTTCTGGGTATATGATACACCATCACCTACCACAAACACTATCCTTCTAGGGTCTTTGGTCTGCTGGTCATAATGTTAGATTCTCCATGGTTCTCTCTAACCGTACCAGTGAGTACATTTTGTGTCACTTTCTACAGGTCCTGCATGTCATTATGCTTCTATCCCTCTACCCTTCTTCCAGGTCACTGGTGTCACTGCTCATCTGCTAGCCAAGTTTCATCCTCATGTCACACTTACCAGTTGAGTTAATTCCATTTGACCTATCCCAGGCTTCCTTGATGCCCAGTGATGAATACCCATACTTTCTTTTTTTTCTTCAGTAAATGGCATGGGGGTTCTTTCAGAATTTAGCCATCTATGATGTAAGAAACAGAAGGCACATGTGACTTTTAAAAACTAACCTAGCCTTAGGAACCACCTAAGACACTGGCTCTCCATAACTAAAAGATTGTTGGTCTTTGGTTTAAAATATTCAGAGAAGTTTTGGACTCCTTGAAGCAGGGAACATTTAAGTCAGAATTTTGTGCATATTTCAGAGGCATTGTCTTTGTATTACCTTACAAATTTGTTACCTATTTCCAGTATGAGAATTTTTATTTACTTGATCTCCATGGGAGTGTGAGGATAAAGTAAAAGGAAGAATTCTGTTTTTCAAACTATGAAAAGTAGTTACTATGTAAAAGTTGGAAAACTACTGTTAAAATGTCACTACTGTCAGATAAAAACAAACTTTTTTTTCTTTTTCATTTTACATCTAG
Seq C2 exon
CGGTCAGTAAAGATTAGAGATTCAAAATTTGGTTTAGCTCTTGTCATAGAAAGCTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736:ENSBTAT00000014216:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(9.3=100)
A:
NA
C2:
PF072896=DUF1448=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]