DreINT0036952 @ danRer10
Intron Retention
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48592177-48592428:-
Coord C1 exon
chr9:48592333-48592428
Coord A exon
chr9:48592240-48592332
Coord C2 exon
chr9:48592177-48592239
Length
93 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
TCCAACCCATTTGTTTAAAGCGC
3' ss Score
5.56
Exon sequences
Seq C1 exon
GGTAATCTTGGGACGTTTTTCATTACTAATGTGAGAATCGTGTGGCATGCCAACATGAACGAGAGCTTTAACGTCAGCATTCCCTATCTGCAAATT
Seq A exon
GTGAGTGGTTATTTGTTAACAAGGAATGAGCTATCATAAAAAAGTCGTATTCATTAAATCTGTGCTTTCTTTTTCCAACCCATTTGTTTAAAG
Seq C2 exon
CGCTCGATAAGGATTAGAGACTCTAAATTTGGACTTGCTCTTGTGATTGAGAGCTCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827:ENSDART00000058255:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(9.3=100)
A:
NA
C2:
PF072896=DUF1448=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAATCTTGGGACGTTTTTCAT
R:
TCTCAATCACAAGAGCAAGTCCA
Band lengths:
148-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]