GgaINT0050439 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:20138436-20139114:-
Coord C1 exon
chr7:20139019-20139114
Coord A exon
chr7:20138499-20139018
Coord C2 exon
chr7:20138436-20138498
Length
520 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTTACCTGTTTACCACTAGCGT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GGAAATCTGGGAACGTTTTTTATTACTAATGTGAGAGTAGTTTGGCATGCAAATATGAATGACAGCTTTAATGTCAGCATACCATATCTACAAATT
Seq A exon
GTAAGTATCTTAAAACAGCCATTTTCAAAATGAAATGTGATAAGTTCTGGTATTCAGTTAACGCTCCCATCTCACACTGACCTAGAATTTCATGTCCTGATGTCAGGGAGAAATTTGGTCTTAGCAGCATTAACTACAGGGTGGATTTCTCTTCTGTCCAGATGAATTGGAAGCTTTCATTAGCATGTTGAGATGTTGAGGAATGGCTTGTATTTTTAATTTCTAAACTACTTACTCTTGTGCTCTGTGTCAGCTGCATGCCCTGAGACTCATGAGCTGCAAATCTCGTGTTGGAAAATGTTTTATCAAAAATATTAATAGTCCACTTTTCCTGAGGCTTTACTGTTTCATAATTGAAATAGAGAGAATGCTGGTAGCCAAGCTTCCAAGAGGTATAATAGTAATTACTACAGTGTTCAAAAAAACCAAAACAATAAAATAATAATAACTTTTTTTTTAAATGCTATCAGGTATTTCCAAAACAGTTTTTAAATGTTTTTTTTTACCTGTTTACCACTAG
Seq C2 exon
CGTTCAATAAAAGTAAGAGACTCAAAGTTTGGCTTGGCTCTTGTGATAGAGAGTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846:ENSGALT00000016007:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(9.3=100)
A:
NA
C2:
PF072896=DUF1448=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]