BtaINT0025648 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001610 | BEB3
Description
Bos taurus solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) (SLC4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_181036]
Coordinates
chr19:44692189-44693648:-
Coord C1 exon
chr19:44693472-44693648
Coord A exon
chr19:44692789-44693471
Coord C2 exon
chr19:44692189-44692788
Length
683 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
GTCCTTCCTTCTTCCCACAGCTG
3' ss Score
12.26
Exon sequences
Seq C1 exon
GTGAAAACCTGGCGCATGCACTTGTTCACGATCACCCAGATTGTCTGCCTGGTGGTGCTGTGGGTAGTGAGGAGCATCAAACAAATCTCACTGGCCCTCCCCTTCATCCTCATCCTCACGGTGCCCCTACGCCGCTTCCTGCTACCATTCATTTTCCGGGACATGGAGCTCAAGCTT
Seq A exon
GTGAGTCTCTGCTTCCACCCCTGTCTTCCTCACGCATTCCCTCTGACCAGAGGGCACAACTCCAGGCAGAGGGCAGAGAGGGGTCATCAGTGGCGCTGGGAGAATGTGGGAGGGGGAGGGGTCTAGGAACTAAGGAAGGCAGAAGAGCGCCGTGATCAAGGCCTGGGTATCCTGCCTGCCTCCTCATCCCAGCCCTGCCATGTCCTGGGGGGTGACCTGGAGCAAGTGGCCTCGTTGCTCTGTACCTCAGGCATCCTCCCCTGGAAAGAGAGGAACAGTGACAGGGCTGGTGAGAGAGCTAGGAGGCTCACGGGATGCGTTGCTTGTGGGTTGTCCTGACCACTGAGCGGTTAGCCCTTGCTCTTCCAAACCATCTGGCCAGTCACTCCTCCCAGAATGCTTCCACGACGTGACACAGGTCACTGCGGCACTGCCCACATGAAGGGGTCTCCTGCCTGCCTTCTGGAGGCCCTCCCCCACCAGGGACCAGATTCCCGGGCGTTCCTAACCCTGAGGAAACTCCTCATTTAGACCATCCCTAGGGGATGAAAGGACAGGATGGGAGACTTGACCCAGGTTCAGGGAGAGACAGGCTCTGCTGAATCCAGAAGCGCCTCCGTGCAGTGGGGAGGGCTCATGTGGCCCCTCAGCCGCTCACCCTCTGTCCTTCCTTCTTCCCACAG
Seq C2 exon
CTGGATGCTGATGATGTCAAACTGAACTTGGATGAGCAGAATGGTCAGGATGAATACGATGAGGTGGCCATGCCTGTGTGAGGGGAGAGCCTGGGCCCCAGAGCCCCCTCCACCATTGCACTTCCCCGTTCTCCCAAGAAAAGCAGAAGTTCCTGGGCACCTCATGGACTCCCAGGTGCCCGGTGGGCAGCAGTTGAAGTCCCGGGGACATGGGTCGGGGAAGGAAGGGGTGTCTAGGAAGCTTTGCATGAAGGGTAGACTGGCTTTTCTGGATGGAAATGACCAGTGGGGCCCAAAGTAGAGGATTCGCTGTGCAGCCCCTCCTGGGCCACACTGCTACCTGAGGGTCCTGGCCTGGAAGACTGAAATCTAAGTCCTACCTCCTCAAGGCACAGACAGCGGCAGTAACAAGGTGGGAGTTGGTGGGGGGTGGGGGGGGATTCAAAATCCTGCTTGCTATATAACCCTGGGGAAGTCCCTGGATCTCTCCAGCCTCTGCTTCCTTATCTGTAAAGTGGGTATATTGATAATCCTACCCACATTACAGGATGGTCTCTGAGCACCAAAGATAAATGTGAAAAAAGGGCTCTGTAAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001610:ENSBTAT00000002116:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(3.9=18.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCCTTCATCCTCATCC
R:
AGCCAGTCTACCCTTCATGCA
Band lengths:
348-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]