GgaINT0050317 @ galGal3
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23588355-23589948:-
Coord C1 exon
chr7:23589775-23589948
Coord A exon
chr7:23589040-23589774
Coord C2 exon
chr7:23588355-23589039
Length
735 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
3' ss Seq
TGCTCTCTGTCTCTTCCCAGTTG
3' ss Score
10.98
Exon sequences
Seq C1 exon
GTAAAGACATGGAGGATGAATCTCTTCACCTGCATTCAACTGGCCTGCATTGTGCTGCTCTGGGTGGTGAAATCTACAGTGGCATCTCTGGCCTTTCCCTTCGTTCTGATCATGACGGTGCCATTGCGACGCTTCGTGCTGCCCCGCTTCTTCCACGACAGGGAGCTCAAAGCC
Seq A exon
GTAAGCAGACAGCTGTCCTTACAGTCTAGCTCAAAACACTGTCGTGAGGTTGAGGAGATTGGGCAGATCAAAAAGCTTGGAGATCCATGGCCACCAAAGCTTTGCCTTTCCCTGCTATATCTGCTGGTCTGAGATGGCTGGTGGCTTCCTCTGAGTTTGTAGCCCTGAAAATAGAATATGGGATGGGTGGGCAGCCTAGAAGGAGACAGAGAATCCTGCCACACAGAGAGCCGGAGTAAAGGTTTTCTTTTCCATCCTTTCCCCCACTTGTGGCTATTTCATCAAGGAGGCACCCTATTTCTCCATGGGGACAGCAGCAAGGGCAGCCCAGCAGCACACCATCTATTTGGCAGAGGAGCACTTAATCTCAGTGCCAGGGTGCTGGCAGCTCCTTGGGTTCTGGCAGCTCCTCAGGTGTTGCCTCCTGAGCTCCTGTTGGAGAGCAGTCTGGAGCTGCAGCCAGAAGCACAGTGTGCCTGGGTGCTGCTGGCAGGGGAGGAGCTGCTGTGCTGAACCGATGTCCCAGTGCTCATGCACTGTCAGAATAAGAGTGTATTGGATTGGGGAAGCATGGGGGTGGGCATGAGGGGCAGAAAAAAAGGGGCCTGTTGGGTGGGAGGGAACAAGAGCTTCACTATTCCTGGAGCTGGTGCAGCCACACCGCATAGCTCAGTGCACACTGTTGGCACAGTGGGCTGCTGTGGCCTTCAAAACCTGCTCTCTGTCTCTTCCCAG
Seq C2 exon
TTGGACTCGGAGGATGCAGAGCCAAACTTTGATGAGGATGGCCGGGACGAGTACAATGAGCTGCACATGCCTGTGTGAACTGGGGCCTGCCTTCCCTGCACTTGGGACAGGCTGCTCACACCTGCTCGTTCCCTCAAGGACTAGCGGGAGACTTGCCACAAGTCAAGCAATCTTGCCTGGACCAACGAATGGCTGTTCCATAGCTCCGCAGGAGGCAGCCCCTGCTCCTGCTGCCCCATCACTCACTCAGCAGAGGCTGCTCGTCTCTCTCCTCTCGGACCTGGTGGGCTGAGAGGTGCCTCTCACATCCCAAAGCTGTGCGGGTCCAGAGCGCCTGTGGGTCAGGGGTCTGCCCTGTCCCTGCTGGAGGCAGCCTGTGTTCAATCTCCAGGTGGTGAAGGGGAGCCATGCCAGCTGGTCCCACTGTGTCCCACTCCATTTCCATGAAGCTTGGGTGTCGCACCACGATGCGCTATTGGGCAGTCACAGGAACTGGCCCGATGCTGTCTGTGTACAGACAGTGGGCTCCTCGCAGGCTGGGCGAGGACACCAGCCTCTGTGCTCAGCTAACAGATGCCTTGCTCCTGCTCCCTCTGTTCTTGCAGCCAAACTGCTGTCCCCTGCCCCTGAGTCTGGAGCTCCCTGTGAGGCACTGCCAACCGCGCCCTTAAGTGTGTGCTCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCTGGCCTTTCCCTTC
R:
GCCTCTGCTGAGTGAGTGATG
Band lengths:
350-1085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]