DreINT0151523 @ danRer10
Intron Retention
Gene
ENSDARG00000052330 | slc4a2b
Description
solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
Coordinates
chr24:33386709-33389661:-
Coord C1 exon
chr24:33389488-33389661
Coord A exon
chr24:33387571-33389487
Coord C2 exon
chr24:33386709-33387570
Length
1917 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
3' ss Seq
TCATCTCTTCTGTTTCTCAGTTG
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTGCGGACGCTGCGGATGCATCTGTTCACAGCTATTCAGGTGGTTTGTCTGGCTGTTCTCTGGGCTGTCATGTCCACGGTGGCGTCGCTGGCTTTCCCCTTTGTTCTCATCATGACTGTCCCCGTCAAGATGTTTCTTCTACCACGCATCTTTAGCAATCGTGAAATGCAGTGT
Seq A exon
GTAAGGACTTCTGCACGCACAAAAAGACGCATACACACTAAGATAATTTGCTGCATGCAATGACATACATGGTTTCCCACCAAGGCAACCTCGGGTGCTGAAATATAATTGGGCAGGTTTAAAGAACAAAACAAAGACAGGATTCTGGCATGTAATGTGCATTTTCAAACCAGAATATCTTACTTCAGCACTGTTTTTAGATAAACAAGAATGTTCACTTTGCATGTTTCTTAAAAATCTGAAAACATATTTTATGGTTTAGAAGAGTCATAAACATACATACAGCACCTTTAAAGGACAATTCAGTATCGAACCAAAGACCTAGATATTCCATTAACATTTGACAACTGTAACTCATCATCATATCTAATATCCGTGTCTACCGAGTGTGTCACGTTCAGGAAAACACACTAGATAGATGGACTCAATTGCAAGTAAAACTTTAATGGAATAAGTCAGGAAGTTCAGTGAGCAACAATGCAAACATTCAGCGTCGGGAGGAAGGGCAGTAGCTGAATCGGGGTAACCGAGTGTCCAAGGGTTCACCAGATAAACAAGGTTCATGACAAGACGCAAAGAAGCCATAAACAAAATGTAATGAACTGACAATGAAGTATGTAATAGAAGAAGCTAAGTGAAATAAATAGAAGAAGCTAAGTGCCAACAGCTGGGCTGAAGACAGACCGGATGATCCTAGTTAGTAAGTCACGACAACTGAATACTCAGAGTTAAAGCCTCTAAATGAAATGTATTGACGTCTATTTTGAAAGTAAGAATTAAACCAAAAAAGGAATTTTTGATCAAAACCTACAAAGTGTAAATTATCCAACAAAACATAATGATCAACCATGTCAAAAGCTTAAGTGAGATTAAAAATTGCATTAGTGGGTTGACTTGGGGATATGAACAAATCATTAGTGAACTTCATTAAGGCTGTAGTAGTCTTTGGTCTAAAACCTGAATGGTAGGAGAATTTATTATTTAAATGATTTCAATAGTATCTGGATGCAGCCTTTATGATGCAAGCTTGCGATGCAATGTCAGACACAATGCACTCAATGGAGCGAATGACTTCACGGTGACGGGTGGGGTTAGGGGTGGGGTTAGGTGAGCGCATTAAAAAGCATTGGATGCAGCTCAGATTGCACTGCACCAGGTCTGCATCCAGACACCTCTCAATTACTTTGAAAATAGATAACATTGTCTTCTTCTTTAAAAACAACTAACAACAACAAACTATTAAAATGCTAATTAAAAAACTAATAAATAAATATAAAAGGAGATGCTACATTTAGTATTTTCTGTGGAATAATGTGAACAGATTTATTATTATTATTATTTTTTGTTTAGGACAATTACCTTAATTTATTATTATTTATTTTTTGCTTTGTTTAAATTTTAGCCATTTTTTCTTCGAATACTGTGAACAGAAATAAAAAATACTTTTATTATTATAATAATCTGTGTGGAGTTGGCATGTTCTCCCAGTGTTGACGTGGGTTTCCTGTGCTTCGGTTTTCCCCACAGTCCAAAGACATGCGCTGTAGCTGAATTGGATAAACTAAATTAGCTGTATTGTATGTGTGTGAATGTGAGGGTGTGTGGATGTTACCCAGTACTGGGTTGCAGCTGGAAGGGCATTCGCTGTGTAAAACATATGCTGGATAAGTTGGTGGTTTATTCCACTGTGGCAGCCCCTAGTAAATAAAGAATCTTAGCTGAAGGTAAATGAATGAATGAATAATCTTTTTAAGGGGACATCACCTGGAAAGAGAGCAATTTGTTTTGTCTTTGCAATAAATTTTTGAGAGGACATAACTCACAAAAGCACACGAGTACAATATGCAGTAAATAGTATTTTCTGTCCCAATCATATTGACTAAAGCTCTCTTCAAAATCATCTCTTCTGTTTCTCAG
Seq C2 exon
TTGGACGCTGATGACGCAGAGCCCACTTTTGACGAGAAGGAAGGACAGGATGAATACACAGAGATGCACATGCCAGTCTGAGGCCGCACATCTTCCTATCAATCACACTATTGGCCAACAGGATGGCTGCTTTTCAAAAAACCAAATCTTTATTGAGCCTGACGTGCGGTGGAGGTGAGAAAGAGCTACATGTACATGGACCTGACCTCCACTCCACAATCCCACAGACTCATTGCATTGGTATTAGAGCGTTTGAGCTGCTATCAACACCGTTTAGCCTTAACCTAGCGTATTCGTCATCCGTGAGAACAACTGAATGTACCATATTGGGGTTAACTGGACGTTCTAAACACCATTCAGGGCCCATGCAATATTATATATGTTCTTTTTAAGCAAACGTTTATGATCGAGAAAGACTGCCAAGGTCGATTTCATCGTAATACTGTGGTTTTAATAGTTTTAATGGCTCATTGTTTAAACTTTCGAACGTCATACAGTATGTTTTCATTGACACAATCAACAGTATTTTTGGTTCTGTTGCCATCAAATCATGAACTACTATTTTTATAATGCCCGAAAGTCATGTGTACATGCTAAACTCTTAGATGAACTCTTTATGTACGGTTGTAGGTTTATTATTGAGCTGTTACATTGAACTCCATTCGAGAAAGTGGTTTTGAAAGGTTTTAAAATGAGTTTTAGCTTGCACTTTAGTCTTAAAACACATTTTAAATAGTCAGTTCATTGAATAATGGAAATTTGACGGTCATTTACTCATCCTAAGGGCATCTAAGATGTTGGTGGCTTTTACTTTTCTTCATTTAGAGAATTGAGAATCTTTAATAAAGGTATTATTTAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052330:ENSDART00000149711:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.489
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(2.2=19.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGTTTGTCTGGCTGTT
R:
GAGTGGAGGTCAGGTCCATGT
Band lengths:
352-2269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]