GgaINT1025706 @ galGal4
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21497517-21502182:-
Coord C1 exon
chr7:21502009-21502182
Coord A exon
chr7:21501274-21502008
Coord C2 exon
chr7:21497517-21501273
Length
735 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
3' ss Seq
TGCTCTCTGTCTCTTCCCAGTTG
3' ss Score
10.98
Exon sequences
Seq C1 exon
GTAAAGACATGGAGGATGAATCTCTTCACCTGCATTCAACTGGCCTGCATTGTGCTGCTCTGGGTGGTGAAATCTACAGTGGCATCTCTGGCCTTTCCCTTCGTTCTGATCATGACGGTGCCATTGCGACGCTTCGTGCTGCCCCGCTTCTTCCACGACAGGGAGCTCAAAGCC
Seq A exon
GTAAGCAGACAGCTGTCCTTACAGTCTAGCTCAAAACACTGTCGTGAGGTTGAGGAGATTGGGCAGATCAAAAAGCTTGGAGATCCATGGCCACCAAAGCTTTGCCTTTCCCTGCTATATCTGCTGGTCTGAGATGGCTGGTGGCTTCCTCTGAGTTTGTAGCCCTGAAAATAGAATATGGGATGGGTGGGCAGCCTAGAAGGAGACAGAGAATCCTGCCACACAGAGAGCCGGAGTAAAGGTTTTCTTTTCCATCCTTTCCCCCACTTGTGGCTATTTCATCAAGGAGGCACCCTATTTCTCCATGGGGACAGCAGCAAGGGCAGCCCAGCAGCACACCATCTATTTGGCAGAGGAGCACTTAATCTCAGTGCCAGGGTGCTGGCAGCTCCTTGGGTTCTGGCAGCTCCTCAGGTGTTGCCTCCTGAGCTCCTGTTGGAGAGCAGTCTGGAGCTGCAGCCAGAAGCACAGTGTGCCTGGGTGCTGCTGGCAGGGGAGGAGCTGCTGTGCTGAACCGATGTCCCAGTGCTCATGCACTGTCAGAATAAGAGTGTATTGGATTGGGGAAGCATGGGGGTGGGCATGAGGGGCAGAAAAAAAGGGGCCTGTTGGGTGGGAGGGAACAAGAGCTTCACTATTCCTGGAGCTGGTGCAGCCACACCGCATAGCTCAGTGCACACTGTTGGCACAGTGGGCTGCTGTGGCCTTCAAAACCTGCTCTCTGTCTCTTCCCAG
Seq C2 exon
TTGGACTCGGAGGATGCAGAGCCAAACTTTGATGAGGATGGCCGGGACGAGTACAATGAGCTGCACATGCCTGTGTGAACTGGGGCCTGCCTTCCCTGCACTTGGGACAGGCTGCTCACACCTGCTCGTTCCCTCAAGGACTAGCGGGAGACTTGCCACAAGTCAAGCAATCTTGCCTGGACCAACGAATGGCTGTTCCATAGCTCCGCAGGAGGCAGCCCCTGCTCCTGCTGCCCCATCACTCACTCAGCAGAGGCTGCTCGTCTCTCTCCTCTCGGACCTGGTGGGCTGAGAGGTGCCTCTCACATCCCAAAGCTGTGCGGGTCCAGAGCGCCTGTGGGTCAGGGGTCTGCCCTGTCCCTGCTGGAGGCAGCCTGTGTTCAATCTCCAGGTGGTGAAGGGGAGCCATGCCAGCTGGTCCCACTGTGTCCCACTCCATTTCCATGAAGCTTGGGTGTCGCACCACGATGCGCTATTGGGCAGTCACAGGAACTGGCCCGATGCTGTCTGTGTACAGACAGTGGGCTCCTCGCAGGCTGGGCGAGGACACCAGCCTCTGTGCTCAGCTAACAGATGCCTTGCTCCTGCTCCCTCTGTTCTTGCAGCCAAACTGCTGTCCCCTGCCCCTGAGTCTGGAGCTCCCTGTGAGGCACTGCCAACCGCGCCCTTAAGTGTGTGCTCCAGCACAGGGGCAAGGAGAGACCCGTGCTCTTCCCTGCTTGGCACAGCTTCCCCTGCACTGTGGGGACAGGCACTGCTGCGTCCTGGCATCTTGCAGATGAGGGGTGCTCTGCAGGTCCTGTCCTCCAGGCTTTCATCTGGAGGCCGCTCTCTCACAGGACTGGTTTCCACCCTTGCCCAGCTCTCAGGAGGATAATTCATTTCCTCATAGTTTTCCCAACTCCTTGGCCCCGTTTCTGCTCCCATGCTGGGGGGACCCTTCACGTCCATTCCAGGTGGGAAGAAGCAGCATTCAGCATGCCCAGCACTTAGCCCTGGCCTCCTTGGGCCTGGCAGGGATGTGTCCTAGGATCTCCTGGCCCAGCAGCCTGGCACATGGGTGGCTCTGATGTAGTGCCCCGATGGTAGGAGGCAGAGTGGCCTTGTGGAGGCGGCTGGGACGCGTGCTCCAACATTGATCAGCCATCAGATTTGGGACAAGCCGCTGCCCCGGTTCCCATTTATCATCCTGGCTCCTGTGGGAGAAGGTGGGTCCCACACCTCCCCGGGAGGCTGCACGAACACCTGCAGAGAGCAAAGCCCCTCCAGCAGCAGGCTCCAGCCCCACCGCCGTGCCCACGCAGGGTGTCCATGTGTCTGTGGCCGTGTGCGTCCTGTCCTCCCTGTGTAGCGTAGGAGGCTGTTGTCGCTGTGCATTGTGACTCCTCTGACTGTAGTGGAAACAGCTACACCAATAAACTTCACAGGAACCACGTTTGGCTCCCTGCTGACGTTAAATTGGTTAAAATTCCCTGACCCAAAACTTCTGCTTGCCCACAGCAGCAGCTGGGGAGGGAACAAACCCAGTGGGAGCGAGGGCTGTCCCATCATCATCTGCTGCCAGCACGGATGTGGGCTCTGCCACCGCCATTAGTGGCTGCAGCAGGCTGAGTTGGGGACCCCACGCTGCCTGCTAGACTAGCAGTCGGGAGCCCCATATTTAACCAGGAACATGCACTTGTGCCTGCATGCAGCCATACACACGTATGCCTGTGCCTGCACGTTCAGCAGCACACGAGCCCGTCTCTTTACCCAGCCTGCAGAAACACGCCAAGCAGCTGAGTACGGAGGAAACATGTCATTAAATACACTTTCCCTCCACACTTTCTTCCCAGATGCGAGCCAACCTGGGCAGGCAGCCTACAGCCCTGCCCCAGCACTCTTCCAGGTCCCTGTGAGCTGGCTCCAGCCTGGGGGTAGGTGCTGCTGCTGCTGTGGGGCACAGGATATCACCCTGCTTCCTGCAGTCAGTGTTGCTGGCTGCTCCTGGGGCTGGGTTTGCCTGCTGGCATGGGGTAGGTGGCAGAGGGCTGAGCAGGCGTGGTGGTCATCCTGCTCCGGGGCTGCTCCCTCTGTGGGACAGCCAACTCCCGGCCCCACAGCATCCTCTCCAGGTGCCGGCAGCGCTTCTGAACCTAAAAGGAGGCAGAAGGAGTGCCCAGCTCCTGCACGTGCAGCATGGTCAGATACAGCCTGGACAGGAGCATTCACACAGAGCCAGACCACACCGCTTACCGCATCGATCCTGCGGACAAGGACGGGCCTGACCTCCAGCTCCAGCAGCCAGTCGGCCTCCAGGATGCCGCGGTGGTACTCCTCCAGCTCCAGGTGCTTCTGCAGCTCCTCCATCAGGGCAGCTGGAGGTGCGTGCCCCCCACGTCCCACATACCCAGGCTCAATCCCCTGGCACTGCAGCTGCAGGCGCAGGGCGCGGATGCGCTGGGTGACGCTGCGGATCTGGGTGTGCAGGGCGGCTGCTCGCTCAGCACGGGGCAGCAGGACCAGGAGCTCCTCCCAGCTCTCCCGCAGCTGAGCCCGCAGTGCCCCAGCACTGCTCCCTGCTCCCCAAAGCTTCATCGGAATGGGAGAGTCTGGGGGTCGGGGAGCCTTACTGCTTGGCTGCACGGAGCCTGGAGGTGAGCAGTGGCTGTATCTGCTCCGGTGCAGACGGACCCACTGCTGGGCAAGCTCAGCCGTGGCCAGGCTCCGGTGGAAGATGTCAGGAAGCAGCCGCAGGACCTTTGCCACTGGCCCTGCGTTGGCAAAGCCACGCAGGTCACGCAGGCTGCGGGGGCTGAACACCCGCTCATGGAGCATCCCTCCCCGCAGCAGCAGTGCCCAGTTGCGGCGGTGGGCGAAGAGGAGCGCGGCCAGGTGTGGGATGGAGGCCGGGGAGAGCGGCTCCTCATGCACATACAGATGCTCACACAGTGGGAACACCACCCTTGTGTCAAACCTCTCCTTCGTGGCCCGCAGGTGCTGCAGGTAAGAGCCCAGCCAGCCCACATAGCCACGCACATCGGGGCTTGGTGAGCCGGGCAGGTGCTTGGAGAGCCGCTCCAGGTCCTCCCAGCTGTCCAGCCTCCCCGAGGGGCTGTGCGGCAGCACCAGCAGCAGCACTTTGTGCAGCACACGGAGGTCGAAGCTGTGCCTGCACTGCTGCACGTGCCTCACAAAGACATCGATCTCACCTTCAAGGGCAGAGTAGAGAGCCTCCGTGGGGGCAGAGGGCTGGCAACTGGGATCAGAGCTCATCTTGAGGGCCAGAGCCACGGCAATACACCATGGAGGGGGAGCAGCTGGGTGCCTGTGCCCCAGCCCAGCCCTGGGGGATGCTCTGGGATGGGACAGACGTCCTTCTGCTCCTTGCAAGTTGCTCAGATATGTCTACACTCTGACTTGCAGCTTCTCCTGCCTCTGCTGCCTATACAAAAGCGAGCTGTCAGCCTTGATTGTCTGGAGAAATCCTAAAAATAGGAAGACAGTCCCCCAAATTATCAGCTGTATTATTTTAAACCGTTGTGTGTTTATAGAAACTATTTGGTTTTCTGTCTTTGCCACCTGTGTCCAACTATGCTCAGGCTCTCTTCTTAGTTAGCTATTTTTGCTCTCTGCAGCCAGGAGGGGCTGGCACATCTCTGCTGGGAGATAGTGCTGGCACTGCTCGCATGGCTGCGCTGCTGGGAAGTTAAGAACGTCGATGGCCAAGACCAACGCCATGGCAAACCTGGGAGCCATTACCACTGACGGGTTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCTGGCCTTTCCCTTC
R:
GCCTCTGCTGAGTGAGTGATG
Band lengths:
350-1085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]