BtaINT0136080 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108285257-108286884:+
Coord C1 exon
chr2:108285257-108285430
Coord A exon
chr2:108285431-108286559
Coord C2 exon
chr2:108286560-108286884
Length
1129 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
CTTTCTACTCCCTTCTACAGCTG
3' ss Score
10.54
Exon sequences
Seq C1 exon
GTGAAGACCTGGCGGATGCACCTCTTTACGTGCATTCAGCTGGGCTGCATCGCACTGCTCTGGGTGGTCAAGTCCACGGCGGCCTCACTCGCCTTTCCCTTCGTGCTGCTGCTCACAGTGCCTCTGAGGCGTTGCCTTCTGCCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCG
Seq A exon
GTAAGGGATGGTGCTTGGGTCTGTCTTAGGGGGCCTGGGTCCTGGATTCAGGGAGGCCTGGCTCCCAGTCTCTTCTGTTGTGTGACTGATCTTCTGAAATCTCAGTGGGGCTCCTGGGTTTCTGGTAGCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCCCTGTTGGATTCCTGGGTTGGGAAGGTCCCCTGGAGAAGGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCCCAGGTGGCTCAGTTGGTTAAAAATCCACCTGCAATGCGGGAGACCTGGGTTCGATCCCTGGGCTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCATTCCCGTATTCTTGCCTGAGAATCCCCATGGACAGAGAAGCCTGGCAGGCTATAGTCCATGGAGTTGGAAAAAGTTGGACACGACTGAGTGACTAAGCACAGCACAATGGGGCTACTAATTGATTCTCCCGTATGAAATTGTGATGATTAAACACGAGTCCAGGTAAAGCAATGAGAAGGGTGGTTTGGTGTGAAGGAAGCAGAGGCTGTTGGAGACAGTTGTGAACAAAACACACAGCTAAGGGACGGGTCGGGTGGGTGGCGTTGAAATCCATCCTGAGCCCTGCTTCGGTCAGCTGGAGCAGGAGGCCTCACTCCCCAGGATCTAATGCCTGATGATCTGACGTGGAGCTGATGTAATAATAATAATAGAAATACTGTGCACAATACATGCAATGTGCTTGAATCACCCCGAAACCATCTCTACCCACCACCCCCATCCTTTCTGTGGAAAACCTGTCTTCTGTGAAACTGGCCCAGGCTGGGATCCTCTGAGCTAGAGGAAGGGACATCTTTTTGAAAACTGTCCATTCACACATGGTGTACAAAGGCACCCCAGGAGCTCGGAGCACCAAGAAAGTTTTTCAGTGTGGTGGCTCCTATCATCATCATTAGGAGGCGTCACTAGAGGGTGACCTGAAGCTTTTGGCCAGAGGGAGGTGCTTCAGCCTGGGGCCATGGTCCCTAAAGGTCTGGGGCAGTGAGGGCTGCCATCCAGAGGAGGAGCTGATGAATGGGAGGCGGCAAGCCCACTTCCCCTGCCTTTCCCAACTTTCTACTCCCTTCTACAG
Seq C2 exon
CTGGACTCTGAAGATGCTGAACCAAACTTTGATGAAGATGGCCAGGACGAGTACAACGAACTTCATATGCCCGTGTGATCCTCCACCACGGCGCCGCTGGGAGACCCTGACACCTTAGTGATCAACACCTGGGCCCCAGTCAGAGCCCAACCCCAGGGCCAGCTGGCTGCTCATGACCCAGAGACGTGCCTGGAACCACTACCGTTGCCTCGACCAGAAGGACCCCCTGACTCTACCCTTGGCGCTGACCTCGTCTCACCCAGGTCCTTTCACAGACCAGACCGGCACAGGCTTTGAGCTCATTATAACCACACTCCTTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975:ENSBTAT00000019936:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCACCTCTTTACGTGCA
R:
ACGTCTCTGGGTCATGAGCAG
Band lengths:
348-1477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]