RnoINT0138460 @ rn6
Intron Retention
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7264683-7265180:-
Coord C1 exon
chr4:7265007-7265180
Coord A exon
chr4:7264916-7265006
Coord C2 exon
chr4:7264683-7264915
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
CCCTCCCTTTCTTCTCACAGCTG
3' ss Score
11.52
Exon sequences
Seq C1 exon
GTTCGGACCATGCGGATGCACCTGTTCACTGCCTTGCAGCTGCTCTGTCTGGCCCTGCTTTGGGCGGTCATGTCCACAGCTGCTTCCCTGGCCTTCCCCTTCATCCTCATCCTCACAGTGCCTTTGCGCATGGTGGTACTTACCCGGATCTTCACTGAGCGAGAAATGAAATGT
Seq A exon
GTAAGCACCCCTCACTCTCTTCTCTCTCTCCTTCCAGTCCTCTCTCCCATGATTCCATAAAAGCCAACCCTCCCTCCCTTTCTTCTCACAG
Seq C2 exon
CTGGATGCTAATGAGGCAGAGCCAGTGTTTGATGAGTGTGAAGGTGTGGACGAGTACAACGAGATGCCCATGCCTGTGTAGCTGCTGTCCAGAGGCATAGCAGAGGGACTAAGGGGCAGGGGCTGGGGGGCTGGGGAGCTGGGGCTCCCCTCCTCCTGTCCCTCCTCATTTTTATTTAAGTGAATAATTTAAAGCCCCCTTGTCCCCACCCTGCAGTAAAGTGCTTCAACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347:ENSRNOT00000019666:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(2.2=19.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCTCACAGTGCCTTTGC
R:
AGTCCCTCTGCTATGCCTCTG
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]