BtaINT0026389 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019386 | BOLA-NC
Description
Bos taurus non-classical MHC class I antigen (BOLA-NC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105616]
Coordinates
chr23:28355361-28355909:-
Coord C1 exon
chr23:28355810-28355909
Coord A exon
chr23:28355389-28355809
Coord C2 exon
chr23:28355361-28355388
Length
421 bp
Sequences
Splice sites
5' ss Seq
ACGCTGAGG
5' ss Score
0.92
3' ss Seq
CTCACGTGATATTTTCTTATCAC
3' ss Score
-4.93
Exon sequences
Seq C1 exon
AACCTCCTCAGCCCTCTGTCCCCATCATGGGCATCATTCTTGTCCTGGTTCTCCTCGTGGTGGCTGTGGTGGCTAGAGCTGTGATCTGGAGTAAGAAACG
Seq A exon
CTGAGGTAGGGAAGACAGGGAGGGACCTGAGTTTTCTTGTCTCACTGGGGGTTTCAGCCCAGGTAGAAGTTTACCTGGCTGGTTACTGGAAAGTACCCTCCACACACATGTGGTGTCTGGAGCTGATGCTAATATTTTCCTTTTCTAAAACACGTGTGAAAATGAAAGAGAAATTTTTCACCTTCCTAATTCCAGTTGGGGACCAGGTTTCCAGCACTTGAAGGTCAGAGGGAGGTCCTTGCTGAGGACCTCCAGGAGGGCAGGTGGCCCCGTCCTTACACGTCTCCCTTCTCTGTGTTCCTGATCCTGGCATGAGTTTTGACCACAGTTCCAGAAAGTTCTCTGAGGTCCAGGACTAGATGTTCCTCTAGGATCTCATGACTCAGCCTTCTCCCTGGCCTCTCACGTGATATTTTCTTAT
Seq C2 exon
CACAGGTGAAAAAGGACGGATCTACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019386:ENSBTAT00000021451:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]