BtaINT0026716 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7246853-7247225:+
Coord C1 exon
chr23:7246853-7246975
Coord A exon
chr23:7246976-7247088
Coord C2 exon
chr23:7247089-7247225
Length
113 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACTTCACCTCTGTTCTTCAGCGA
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTATTAAAAAGCCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAACTAGAAAAGCGGTTACAAGATGTTAGTGGGCAGCTCAATTCTACCAAAAAGCCCCCCAAGAAAG
Seq A exon
GTGAGTGTCCCATAAGCCACTGTGAGTTCATTACATCCTGCCCTCTTGGTTCTTGGTTCTTCAAAAGTGGAATGTAGGTTTACACATTTTTAAACTTCACCTCTGTTCTTCAG
Seq C2 exon
CGAGTGAGAAAACAGAGACATCCTCAGCACAGCAGGTAGCGGTGTCCCGCCTCAGCGCTTCCAGCTCCAGCTCGGATTCCAGCTCCTCCTCTTCATCTTCCTCCTCTTCAGACACCAGTGATTCAGACTCAGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074:ENSBTAT00000014704:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTGGGAAAGACAAAGG
R:
GCCTGAGTCTGAATCACTGGTG
Band lengths:
248-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]