GgaINT0123645 @ galGal3
Intron Retention
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:72250-72880:-
Coord C1 exon
chr16:72758-72880
Coord A exon
chr16:72685-72757
Coord C2 exon
chr16:72250-72684
Length
73 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCAGTGCTGTCCCATTGCAGCCA
3' ss Score
7.49
Exon sequences
Seq C1 exon
CCATGAAGAAGCCGGTGGGGAAGACGAAAGAAGAACTGGCGCTGGAGAAGAAGCGGGAGCTGGAGAAGCGGCTGCAGGACGTCAGCGGGCAGCTCAACTCAGCCAAGAAACCCCCAAAAAAGG
Seq A exon
GTGAGTGTGGGGTCTGGAGTGGGATTGGGGTGTGATCTGTGGTGGTGCTGAGCGCAGTGCTGTCCCATTGCAG
Seq C2 exon
CCAACGAGAAGCCCGAGTCAGCACAGCAGGTGGCTGTTTCACGGCTCAGCGCCTCCAGCTCCAGCTCCGACTCCAGCAGCTCCAGTTCCAGCTCCTCGTCCTCGGACACCAGCGACTCGGATTCGGGTTAAACCCCACAGCACCACATGGGGCAGCATCCCGAGCGGCTCTGCGGGACCGGGCCGGCGTGGAGCAGACTGAGAGCCCCCCAGCAGCCCAGAGGACGCCCCATGGACTCAGCTGGGGGTCCCGGTGTGACCGGAGGCCCTCGAGCATCCCCAGGGCAGTGTGGGGCTGTGGGGTCGGACAAGGGGGGGTCGGCGGTGCCCCCCAGCAGGTTTTACTGTTTGTTGTGTTAGGGTTGGCTTTTTTTTTTTTTTTTCCTCCTGACTCGTGGGATTTTTTCCAAAAAAAAAAAAAAAAAAGGGGGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156:ENSGALT00000000212:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCAACTCAGCCAAGAA
R:
TGTGGTGCTGTGGGGTTTAAC
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]