MmuINT0025651 @ mm9
Intron Retention
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34248964-34249923:-
Coord C1 exon
chr17:34249801-34249923
Coord A exon
chr17:34249654-34249800
Coord C2 exon
chr17:34248964-34249653
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTCTACCTTTAACTTTACAGCGA
3' ss Score
8.32
Exon sequences
Seq C1 exon
CTATTAGGAAACCTGTGGGAAAAACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAGCTAGAGAAGCGGTTGCAGGATGTCAGTGGACAGCTCAACTCCACCAAAAAGCCTCCCAAGAAAG
Seq A exon
GTATTTCAGACTGCTAAACGTTATATTCACTCTTTCTCTCCTTAAGTTGAATGCTGGGACTTGAACAGAGGATTGGCTAGCTAGCAACTAGCCCTTGTGACTACCTGACAAATGAAAATGTCACATCTTCTACCTTTAACTTTACAG
Seq C2 exon
CGAGTGAGAAGACAGAGTCATCTGCACAGCAAGTGGCAGTGTCCCGTCTCAGTGCTTCTAGTTCCAGCTCAGATTCCAGCTCCTCGTCGTCATCTTCCTCTTCTTCAGACACCAGCGATTCAGACTCGGGCTAAGGGGCCAGGCCAGATGGGGCAGGAAGGCTCCGCAGGACCGGACCCCTGAACCACCCTTCCCCACTTTCCCTTGCTGTGACGCTTCTTCATCTCACCCCTCCATAGGAGAGCTGGCTCTGCAGTGGGGAGGAAGGCAGGGACATGGACAAAATACGATTGAATTCCTAGCCCTCTTGGGTGTGGTGTCCCTGTTGAGGATGATGGGGGTGGGGCAAGGGTATGGGTGGGAGTGGGGATAGGCCTGGCATAAAGCCCCCTGAGCTGTAGCTGTCCTGTTCACTTCTAAGGGCCCTGTTTTGAGGTTTTAATTTATTTAAGCTATGTGGTAAGGCTGGGGGTGTGTAGCCGTGGTCCTCCCTCCAGCTTCCATGGGGAGGGAAGAAGAGGGAGCTCTTTTTGTTTTTTACATTGACTTTTTTTTTCTACTTTTCCCTTTTACTTCCACTCCATTTGGGGCCTGGGGATTTTAGTCACCTCTCCAGTTGGCCCCAAGACTGTCTTTTCTTTCTTGAGTCTAACATGTAAATAAAGAAAATATTATTGAAGTTTTGAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335-Brd2:NM_010238:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGACAGCTCAACTCCA
R:
CAGCAAGGGAAAGTGGGGAAG
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: