DreINT0038102 @ danRer10
Intron Retention
Gene
ENSDARG00000022280 | brd2a
Description
bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
Coordinates
chr19:7250009-7251749:+
Coord C1 exon
chr19:7250009-7250137
Coord A exon
chr19:7250138-7250238
Coord C2 exon
chr19:7250239-7251749
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TCTGTCTTTCTGTATTTCAGCGG
3' ss Score
10.75
Exon sequences
Seq C1 exon
TGGCCATAAAAGGCTCTGCAGGTAAATCTCGTGAGGAGCTGGCTCTGGAGAAGAAGAGAGAGCTGGAGCGGAGACTGCAGGACGTCAGCGGACAGCTCAACTCCGTCAAGAAACCACAGAAAACCAAAG
Seq A exon
GTAGAGCCCCAGAAGATGAACACACAATCACTCACACACACACTCATGATCATGTTTAAAGCAGAACCGTGAATGACCTCTTCTGTCTTTCTGTATTTCAG
Seq C2 exon
CGGAGAAGCCGTCAGCGGTGGAGCCTCACGCAGTGGCGTCACGTCTCAGCGCCAGCAGCTCCAGCTCAGACTCTTCATCATCCTCCTCCTCTTCCTCATCCTCTGACACAAGTGAATCAGACTCAGACTGAGCAGATGATGATGATGATGATGATGATAGAAAAAAAAACATGCACTCCATCCCAGATCACGACATGCAGAGAGAGACAAATAAAGAACAGGCTTTCTCTTTACAGAGAATTCTGGGAAAAATAAAGGGTGGAGGAGGAGCTGATGGGGGAAATCAGAGCAGGGTGTTGTCTGATTGGAGACTGGTTTCCATTAGTTCATCCTCCTCCGCTCTGTGTATATACCTGTATAAAGATATATAAATATCTATTTTTCTTTTATAAAGAAGAATTTTAAGCAATTCCCTGGTAGGGAAGACAATGATTTTCTTTTTGTGAATCTTTTATGTTGCTTTCTTTCTCTCCTCCTCTTTTTTTCGTGTAAACTATGAATTATTTGTCCTAAAGAAAACAAAAGGCTTGGAGTGGAAACTGCTGTCACTTGTGTTTGCATGAGCGAGAGAGAGGGTGGGTGTGTGTGTGTGTGAGTGAGAATGTGACATTGACACCAGTGCTTTTCCTGGTGGATTTACACACACTGCACATACATGGATGTGTTGTGCATTTGAATAAATAAAAACAGAAGCTCCACCTATTCAAATGAAATCATCTGTAGTAATGGAGAACAGGGCATTAGGTGACCTGTCTCTTTTACCGGGTGATCTGTTGGCTTCAGTGGCGTTTTAAAACTTGAATCTGATCTCCATCATCCAGCCTGCTTTATTCTGAGTTTCAAAATCTTCATTGTTTCTTACACAAACTTGCCGAGTCTGGCTCTGTGAATCCGCCGGGCCACATGAGCGTCTGTTTTTCTGCATACATAAATTATTGGAACGGTCGTGTGGTTTCGGTGCTGGATTGCGGAGCAGATGCGAGTGTTAGATGCACTATCGGACACACAGCTGAGTCACGAGCTGTGGAGATCAATACTGTTCTGTACATCTTGCTTTTTGACTTAGGATCTGCGTTTTGTTTTAGTGTTTATAATTATTTGCTCTGAGAATTCATGCACAGATTGAGTTTTTTTTACCCTCATAAGTCAGAATTTCAATACTTGGAAATGTAGGTTCAGTGTCATAAGACATGCTGTTACAACAACAAAGATTTCTCGGTCTCTTTTCTCTCTGGAGATGTTGTACATATGCACCAGTTTGATGAGCTGATCTGTGTTTCCTGCATTAGTTTGTCTTGTTTACATCGGCCTTCAGCTCTTCTCTTCAGTCTTGTGGCTGGTTTTTCCACAGCTCGTTATGGTTTAAGACGATTACAAAAAACAAAAACAAAAAAAACAGAACGAAGTGAAACCTCATGCTGTAAGCATCGTCTCAACAGATGCTTCATGCAACCATAATTCTCATCTGAAATACGTCACGTTAATAAAGGGGGTGAGAAGTCCTAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022280:ENSDART00000035967:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCTCAACTCCGTCAAG
R:
CTCTGCATGTCGTGATCTGGG
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]