HsaINT1005385 @ hg38
Intron Retention
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32980342-32981505:+
Coord C1 exon
chr6:32980342-32980464
Coord A exon
chr6:32980465-32980581
Coord C2 exon
chr6:32980582-32981505
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTCGAATTTGTTCTGCAGCGA
3' ss Score
8.06
Exon sequences
Seq C1 exon
CCATTAAGAAGCCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAAAAGCGGGAATTAGAAAAGCGGTTACAAGATGTCAGCGGACAGCTCAATTCTACTAAAAAGCCCCCCAAGAAAG
Seq A exon
GTGAGTATATACTTTCATGCCACTACAGATTGACTCCATCCTGCCTTCTTGACTGTCTTTTATTGACAAATGAAGATTCAGACTTGAACGTCTTTAACTTTCGAATTTGTTCTGCAG
Seq C2 exon
CGAATGAGAAAACAGAGTCATCCTCTGCACAGCAAGTAGCAGTGTCACGCCTTAGCGCTTCCAGCTCCAGCTCAGATTCCAGCTCCTCCTCTTCCTCGTCGTCGTCTTCAGACACCAGTGATTCAGACTCAGGCTAAGGGGTCAGGCCAGATGGGGCAGGAAGGCTCCGCAGGACCGGACCCCTAGACCACCCTGCCCCACCTGCCCCTTCCCCCTTTGCTGTGACACTTCTTCATCTCACCCCCCCCCGCCCCCCTCTAGGAGAGCTGGCTCTGCAGTGGGGGAGGGATGCAGGGACATTTACTGAAGGAGGGACATGGACAAAACAACATTGAATTCCCAGCCCCATTGGGGAGTGATCTCTTGGACACAGAGCCCCCATTCAAAATGGGGCAGGGCAAGGGTGGGAGTGTGCAAAGCCCTGATCTGGAGTTACCTGAGGCCACAGCTGCCCTATTCACTTCTAAGGGCCCTGTTTTGAGATTGTTTGTTCTAATTTATTTTAAGCTAGGTAAGGCTGGGGGGAGGGTGGGGCCGTGGTCCCCTCAGCCTCCATGGGGAGGGAAGAAGGGGGAGCTCTTTTTTTACGTTGATTTTTTTTTTTCTACTCTGTTTTCCCTTTTTCCTTCCGCTCCATTTGGGGCCCTGGGGGTTTCAGTCATCTCCCCATTTGGTCCCCTGGACTGTCTTTGTTGATTCTAACTTGTAAATAAAGAAAATATTATTCAAGTTTTGAGTTACCTTAATATTTGCTTTTGTAGTGTTTCAAAAGGAACATCATAAGAATTGTCTTGATAATTTTGAGGGAAATATTACTGCAGTGAGAAAAGGCAATAGCTAACCTATAATTGGATTGTCTTAATTTTTAAACCAGTAGGCTTTTGCTGTGTTTTTAATAAAGTAAATATGACTTTTGTAAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256:ENST00000374825:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTGGGAAAGACAAAGG
R:
TGACCCCTTAGCCTGAGTCTG
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains