BtaINT0026732 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104868475-104869712:-
Coord C1 exon
chr11:104869521-104869712
Coord A exon
chr11:104868699-104869520
Coord C2 exon
chr11:104868475-104868698
Length
822 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCGGCGGCCGTGTCTTCCAGCTG
3' ss Score
7.68
Exon sequences
Seq C1 exon
GACGTGTTTGAGATGCGTTTCGCCAAGATGCCAGACGAGCCAGCAGAGGCACCCGCCCTGCCCGCGCCTGCAGCCCCCGTGGTCAGCAAGGGCGTGGAGAGCAGCCGCAGCAGCGACGAGAGCTCGTCGGACTCAGGCAGCTCGGACTCGGAGGAGGAGCGTGCCACGCGGCTGGCGGAGCTGCAGGAGCAG
Seq A exon
GTGAGCGGCCGTGCGGGCCAAGGGGCTTGGGCAGGACCACGGTCCGTCCCCGCCGGCCCCTGACCCAAGGTCTGCCCCAGCCGCCGCCCCCTCCCCAGCCACAGCCATCCTCGCTGCGGTGTCGCTGGGAGGGAACCTGGGAAAGGTGTCAGTTTCAGGGCCCCCTCGCCAGTGCCTGCAGGCCTGGGGCCCTGTGAGCCCGCCTGTGTTGGAATGTCCCTGGAGCCTCTTCCTGCTCTGCAGAAAGGTCTGCAGGGGCTGCAGCCCTGCGGCCCCTAGAGCCTGCCTCTCGGGGCGGGGGGGGGGTGGGGGTGCGAACAGGACTGTCCTGCCTCCGCCTCTGACCCCTGAGGCTTGTTCCCACCCCGCTTCACGCTCCTTCTGTGCAAGATGGGAGCACGAGGTGCTAGATTCCCGGGGGGCCCTCTGGCAAGGAGGAGACAGCGAGTAGCTGAGCCCCGTGGGGGCTCACAGGCTGGGGTCCCTCCCGTGCCGTGGGACGTGGTCGGCGTGCGCAGCATCCCCATCCTAGCCCGTCCACCTACTAAAGGCTGGGGTCACTGTTTCCTCGCCTGTGGAGCGTGGCTCCCGGAGCCCCTGGGCCCCTTGGGGGGCTGATGGGGTGAGGGGCGCGTGGAGTGCGTACACGCTGCCCGCCGCTGCAGGCCTCGTTCGGTGTTGGCTGCTGGCCCTGCGTGCCCCAGCAGCTTGCCCACGAGCTCGGCTGCGGATGTTCTCTCCGGGGTGGGCGGTTTAAGCGCCTTCCCGGAGCGTCTCCCTCCGCCCAGCCCGGAGTCCTCACCCGGCGGCCGTGTCTTCCAG
Seq C2 exon
CTGAAGGCTGTGCACGAGCAGCTGGCGGCTCTGTCTCAGGCGCCGGTGAACAAGCCAAAGAGGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAGGACAAGGACAAGGAGCGGCACAAGGCCAAGGCCGAGGAGGAGAAGCGGGCCAAGGCCGCCACGCCCGCCAAGCAGGCCCCGCAGAAGAAGGCGCCCGCCAAGAAGGCCAACAGCACCAGCGCGGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582:ENSBTAT00000013992:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF112443=Med25_NR-box=PU(50.0=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGCCAGACGAGCCAG
R:
CTTCTTCTGCGGGGCCTG
Band lengths:
352-1174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development