HsaINT0018495 @ hg38
Intron Retention
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134040034-134041951:-
Coord C1 exon
chr9:134041760-134041951
Coord A exon
chr9:134040270-134041759
Coord C2 exon
chr9:134040034-134040269
Length
1490 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AGCCGCCCGCTCTTTTCCAGCTG
3' ss Score
7.84
Exon sequences
Seq C1 exon
GACGTGTTTGAGATGAGGTTTGCCAAGATGCCAGATGAGCCCGTGGAGGCACCGGCGCTGCCTGCCCCCGCGGCCCCCATGGTGAGCAAGGGCGCTGAGAGCAGCCGTAGCAGTGAGGAGAGCTCTTCGGACTCAGGCAGCTCGGACTCGGAGGAGGAGCGGGCCACCAGGCTGGCGGAGCTGCAGGAGCAG
Seq A exon
GTGGGCACTGGCATGCTTGGGTGGGGTTCAGGGGCTGAGGCGGGATTGCTGGCACAGCAGCCCAAGGTCCGTCCCTTTGCATGGTTCCTTCCTCTGCCCCTGTCCCTCAGCAGCCGCGGTAGTGCTTCCCCGTAAAGACACTCGGAGTGCCCTCCCCAGGTCTGGGGTGGTGCGAGCCTAACCCACAGCACACGTGGGTGGCTGCGGGGACACGTGGCTGGGATGTTTCTGGAGACCTGGCGGGCCTCAGGTGGGAGCTCAGGGGTCATGTGTGGTTATGTGTGCCTTGCTCTGCTCCAGAAAGGCCTGTGAGGCACTTGCAGAGGCCACAGTAGTGCCTGGGCTCCAAGCAGTCACTTGCAGTGGGGTGGGGTGCAGGCTCCAGGGTCCTGAGGGCCCTGCCGTGCAGCTGCCCAGCCCCAGTCCCGCTGCCAGGCTGTGCTTCCTCCCCCTTCTCTGCTTTCCTCGTTTGCAGTATGGGACAAATGTCACCCACTCTGAGCTGTCTTGAGGTCAGATTGAGAAAGATGTGAATTGTTTCCCCAGACCTCTGGCAGCCAGCCAGATGCATGATTTCTGGGACCCCAGATTGGGAGAAAATAGAGCAGGGCTGTCGAGTCAGGAGGGGAACAGCATGAATCAGGGCTGCAAGGACAGCGATGGCCCTGCAGTCCCCAGAGTTGGGCTGGACATTTGATTTTGAAGTGGCAAGGACACACAGCAGGGAAGACGGCTGTGAGGTGGCAGCTCCTCCACCCGCCCTCTGTCTTCCTTGCACAGACCACCCAGAGGCAGGGACAGGCCGTGGACTCACATGGGCAGTGCCTCTCAAGGGGCCTCTCCCATGGAGGTGGCTGCAGTGGGGAGGGCGAGGCGCTTGGCACAATGCCAGCTGCAGGGAGGCCCTGGATTAATGCTGGTTGCTGGCAGTGGATTGTTTTAACCCCGGAGTCCTGCGTGTTATCAAATGGCTTCCCAGAAATCACTGATGAAAATCTCCTTTGTGTGGGCATTTAAACTTCTAGAGAGTCCTTCCTTATCTGAACAATGGTAATAATAAAAATGTTAGCTGCCCACCTAATGTAGATGACGGGTTGATGGGTGCAGCAAACTACCGTGGCACATGTATACCTATGTAACAAACCTGCACATTCTGCACATGTATCCCCGAACTTAAAGTATAATACATTTTTTTTAAAAAGTTAGCTGCCCTCACCGAGTCCCTGTTGTGCCACCCGCGCAGTGCTGAGCCTGTGGCCAGGCAGCTCTTCCCCACTGCAGGCGAAGAAGCCGAGGCGGAGAGGGCTCATGACTCACTGGGGGTCACGGGAGTGAGGGGCAGAGCAGGGCCCAGGTGCTCCTGGTTCACCTCCTCACCCAGCTGAGGCAGCTCCGACATCGCCCCAAGCCCCCTCCAATCCCAGGGCGCCACGCAGCCCCAGTGGTGTGGGCCGTGCCCAGCACCTGCTCAGCCGCCCGCTCTTTTCCAG
Seq C2 exon
CTGAAGGCCGTGCACGAGCAGCTGGCCGCCCTGTCTCAGGCCCCAGTAAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAGAAGGAGAAGAAGAAGAAGGACAAGGAGAAGGAGAAGGAGAAGCACAAAGTGAAGGCCGAGGAAGAGAAGAAGGCCAAGGTGGCTCCGCCTGCCAAGCAGGCTCAGCAGAAGAAGGCTCCTGCCAAGAAGGCCAACAGCACGACCACGGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925:ENST00000303407:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTTTGCCAAGATGCCAG
R:
CCACCTTGGCCTTCTTCTCTT
Band lengths:
342-1832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development