MmuINT0025671 @ mm9
Intron Retention
Gene
ENSMUSG00000026918 | Brd3
Description
bromodomain containing 3 [Source:MGI Symbol;Acc:MGI:1914632]
Coordinates
chr2:27308920-27310024:-
Coord C1 exon
chr2:27309833-27310024
Coord A exon
chr2:27308971-27309832
Coord C2 exon
chr2:27308920-27308970
Length
862 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTTTCGCTTTGATCCCGCAGACT
3' ss Score
9.38
Exon sequences
Seq C1 exon
GATGTGTTTGAGATGAGGTTTGCCAAGATGCCCGATGAGCCCATGGAGGCGCCTGCGCTGCCCGCTCCCACGGCCCCCATCGTGAGCAAGGGGGCTGAGAGCAGCCGCAGTAGTGAGGAGAGCTCTTCAGATTCAGGCAGCTCAGACTCAGAAGAGGAGCGAGCCACTCGGCTGGCTGAGCTGCAGGAGCAG
Seq A exon
GTGAGGGTGAGCAGCCCTGCTGCTTCCCACTGGGCATGTGCCACCAAGCCTAGCTGCCCGAGCTGGCCCCGGCCGGCCATCCTCTTTCCTTTCCTTCGCCTGCTGCGGCCCTTGTCTGTGCTGGTGGAGTAGTCTCTGGTGGGGTTGCTCACAGAACCTTCCTGGGTCTGAGGAGGCTGGAGCCTGACACCCAAGAGCACACAGGTAGCTGAAAGCACTTGTGTGCCTGAGTCATTCTTGAGTCCCTGGGGGCTGGGCTCTCCAGAAAGGCCTGGGGGTCATACACAGGCCACAGAAATGTCTTTTAAGTAGCAGCTACAGTGGGTGTGCTCCAGGCTCCAAGAACCCCTCGGAGCCTGTCTCAAATCTGTGCCTCTCATGCCCTCCTCTGCCTCAGTCTCCCTGCTGTGTAGAACGAGGTGACCTGACTGTTCTGAGGAACAGTCCAACTATATGAACTACTTTCCCAGGTGTGGCAGCCAGCCCTGCGAAGTCAGAACACAGCCACCAAGACAGTAGTGTGCGTGAGCAGGTGGCTCCAGGGGGAGGCAGGGCTAGGAGAGTAGAGTGTCTTGAGATGGAGCTGCATGTCAGACTCTGGCATGCTGAGGCCATGGAGCAGGGAATTGGCTGTGAAGGGTGTGGCCTTAGGGCTGCTGAGTCCTTCCCACTGCATGGTACCTTCCCCTGTTGGCTATGGAGCTTTTCCTGAGGTACCCAGGAGCCACGCAGGCCACCTGCTTACCTGTACATGGTGGGTCGCGGCCCCTCCCCAGACATGAGTGCAGCACTCTGTCTTGCCGGCTGCTGGTCGGGCCTCGGGAGGATGAGCCGCTGTCATTGTTTCGCTTTGATCCCGCAG
Seq C2 exon
ACTGGCTGCGGAGCCTTCCAGGATCAGCTGTTGAATGTCTCCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026918-Brd3:NM_001113574:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=NA C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTGAGATGAGGTTTGCCA
R:
TGCACAGAGGAGACATTCAACA
Band lengths:
240-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: