BtaINT0029315 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112250054-112250631:-
Coord C1 exon
chr8:112250529-112250631
Coord A exon
chr8:112250129-112250528
Coord C2 exon
chr8:112250054-112250128
Length
400 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAAT
5' ss Score
-0.19
3' ss Seq
TCCTCTCTTTGTTCCCTTAGCTT
3' ss Score
9.38
Exon sequences
Seq C1 exon
CTACAAGCTCAGCAGTGAGGAATCGTCATCTGGGTCCTCTCACGCGGTAATGGATATCTCTCTGCCTACCGGAGTCAACGCAAACCCAGAAGACTTAAAAGCT
Seq A exon
GTAAATGTCTTCTCTTAAATATTGTTATGGATACTTGCTTTTATTTACTGCATTATTTTACAAAGCTATTTCCATTCATTCTATGTCACTTTCTTAGACTCTCCCAGAATATTCTTTTCAAACTGATAATCTACCTAAGTTTTTATTTTTCAAAGTGAAACTGAAAAATATTCAGTTTTATATTTATATAAATATTCAGGGGCAAGTATTATGCTTGCACGTACAGAATAGTGTGCGTGCATGTGATGACATGTTCAGACTCTTTCAAGAGGAGGAGCTGCTCTTCACTGTCTTTAAGTAGTGGATTACATCCCCACGGCCTCACATTCCATCACTGGGTGAACGCACTTAAACAGAAAGGTCACGAGTTAAATTTGAGCTCCTCTCTTTGTTCCCTTAG
Seq C2 exon
CTTGTGGAACAGGTGGATCAATTATTAACTGACTACGAAATCAAAGATGGGCATGTTATTCTGCAACTGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210:ENSBTAT00000016204:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(24.2=62.9)
A:
NA
C2:
PF076779=A2M_recep=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]