HsaINT0024233 @ hg19
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123725171-123726016:-
Coord C1 exon
chr9:123725914-123726016
Coord A exon
chr9:123725246-123725913
Coord C2 exon
chr9:123725171-123725245
Length
668 bp
Sequences
Splice sites
5' ss Seq
GCCGTATGT
5' ss Score
6.35
3' ss Seq
TTCTCTCTTTTCCCCCTTAGCTT
3' ss Score
9.68
Exon sequences
Seq C1 exon
CTACAAGCCCAGCAGGGAAGAATCATCATCTGGATCCTCTCATGCGGTGATGGACATCTCCTTGCCTACTGGAATCAGTGCAAATGAAGAAGACTTAAAAGCC
Seq A exon
GTATGTGTTTTCTTTTAAATCGTGTTGTGAATGCTTCATTTTCTTTTCTGAATTATTTTATAGACAATTTTACTTTCTTTCATTTGAATATACCACTTTTATAGAATCACCCAGAATATTTTTTTTTTTTTGGAGGTGGATTTTCACTCTTGTTGCCCAGGCTGGAGTGTGATGCAGTCTTGGCTCATTGCAACCGCACCTCTCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTTTTGTATGTTTAGTAGAGACGAGGTTTCTCCATGTCAGTCAGGCTGGTCTCGAACTCCTGACATCAGGGTGATCCACTGGCTTTGGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCCACCAGGCCTGGCCAGAATATTCTTTTCAAAACATAATTAACCTAAGTTTTGATTTATCAAAGTGAAGCAGAAGCATACACTAGCATGCTCTGTAAAATATGAGTTTATATGCTAATGTGTTCAGACTTTTTCAAGAAGAGGAACTGCTCTTCAATTTCTTTGAATTACAGATCACATCCCTGCATTGTGCTATCTCATCAACAGGTGAATGCATTTAAACAAAAAGATAATGAAATGAAATTCAAGCTTCTCTCTTTTCCCCCTTAG
Seq C2 exon
CTTGTGGAAGGGGTGGATCAACTATTCACTGATTACCAAATCAAAGATGGACATGTTATTCTGCAACTGAATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-C5:NM_001735:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(24.2=62.9)
A:
NA
C2:
PF076779=A2M_recep=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)