RnoINT0027430 @ rn6
Intron Retention
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14058471-14058975:-
Coord C1 exon
chr3:14058873-14058975
Coord A exon
chr3:14058546-14058872
Coord C2 exon
chr3:14058471-14058545
Length
327 bp
Sequences
Splice sites
5' ss Seq
GCTGCAAGT
5' ss Score
0.81
3' ss Seq
CTCTCCCCTTTCTTTCTTAGCTT
3' ss Score
9.96
Exon sequences
Seq C1 exon
CTACAAGCCCAGCAAGGAGGAGTCAGCATCTGGGTCCTCCCATGCAGTAATGGATATACTGCTGCCGACCGGAATCGGAGCAAACCAAGAAGATTTACGAGCT
Seq A exon
GCAAGTGTTCTCTCTCTTCGAGATGTTGTGAATGCTTGGCTTTCTTTCCTATGTCACTTTATGGGCAAACTTTTATTCTTTTACTTCAATATCTCACTCTCATGCAATCACTCAAAATATTCTTTCTAAAACAAATGTGTAACTGTGATTTGACGTATGACAATGAAGCAGGAGCATGCGCAGTGATGTGTTCAGTCCGGAAAGGAATCATCCTTCCGCTCAGAGTGGTGGGCTACGGTGCGGCTTAATAGTCCATCAACAGGGAAATGGAATTAAACACAAAGATAAGGAAAGTACCTTCAAACTCCTCTCCCCTTTCTTTCTTAG
Seq C2 exon
CTTGTGGAAGGAGTAGATCAACTCCTAACTGATTACCAGATCAAAGACAGTCATGTTATTCTGCAATTGAATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899:ENSRNOT00000025534:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(24.2=62.9)
A:
NA
C2:
PF076779=A2M_recep=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]