BtaINT0029700 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99326076-99327141:-
Coord C1 exon
chr11:99327099-99327141
Coord A exon
chr11:99326122-99327098
Coord C2 exon
chr11:99326076-99326121
Length
977 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
TCCCCCAACTCCTTCTCCAGGGT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GGCGAACATGGCGGAGCCTGCGAGGAAGCGGCCCTGTGGTCCG
Seq A exon
GTAGGTGGAGGGATGTGCGAGCCCTGCGGCAGGGCACCGGGCTGGGGTTAAGAAATAGAGCCGCGTGGGGCCCCGTGGCGGGGCCGAGTCGCCCCTCCAGCTCCAGGCTCGTCGCTGCTCCGCGGCCGGAGTCCCCGAGCTTGTTGCCTGCTTGTGGCCTCAGTCACCCCTGTGCCGATGAGCAGCGGAGCCGGGACAGCGTTGGTAACTCATTACCTTACCGGAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTCGCGACCCCATGGACTGTAGACCACCAGGCTCCTCCGCCCATGAGATTTTCCAGGCAAGAGTACTGGATTGGGTTGCCGTTGCCTTATGGCCAATGGCAACCTTGCCGAAGTCCTTAGTGGCAACTCTGCCCGGGGTTCGGATTCGGAAGGCGGGACCCGGCTCCTTCCCGAGCCCTTTCATGGCGTATCTCTTCTGATAACCAGGGCGGCAGTGGGCAAGTCCTGTCCCCCTGAACCTCTTTCCTCTTCTCTCCAGTAGGAACTCATTTAACAATTTACTGAATGCTTACTATGTTCCAGCTATGGTCTCAGGCACTGGGGGTACATGTCCCTGCCCTCCTGACGCTCTCTCTTGGCCAGTATTGTGTGTGTGTGTGTGGGGGGGGTGCCCCTCGTTTCCTCACTACCCTCATTTAAAGGGGCTTCCCTAGTGGCTCAGACAGTAAGGAATCTGCCTGCCAATGCAGGATCCCCTGGAGAAGGAAATGGCAACCCACTCAGGTATTCTTGCCTGGAGAATCCCACAAACAGAGGAGCCTGGTGGGCTGCAGTCCATGGGGCCGCAAAACAGTTGGACACGACTGAGCACTAACCAACAAGAGCTCATTTAAACAGAGGAGACAGCTGGGGAGCAGCAAGTGGGAACACCTCCCCCGCCCCAGCTCAGGTGTGACCATTCAGCCTCACTCCTGTATCTCCCCCAACTCCTTCTCCAG
Seq C2 exon
GGTGAACATGGCCAAAGAGTAGAGTGGCGGAAGTGGAAGCAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485:ENSBTAT00000016565:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development