HsaINT0025306 @ hg19
Intron Retention
Gene
ENSG00000198917 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:26933]
Coordinates
chr9:131591389-131592085:-
Coord C1 exon
chr9:131592024-131592085
Coord A exon
chr9:131591435-131592023
Coord C2 exon
chr9:131591389-131591434
Length
589 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TCCTACCACTCCTTCTCCAGGGT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GGCGGGACCGACGGTGTGTGCGGAACATGGCGGAGCGCGGCAGGAAGCGGCCGTGCGGCCCG
Seq A exon
GTAAGTGCGGGCGGCGGGACCCCGTGCAGGGCAGCATGGTGGAGGCGTGAGAACCAGTGGCGTGGGGGCCTTCGCCGGGGCCGGGCCGCGCCTCCTGCTGCCTGCTTCCCGCTGATCCCAGGCCGGAAGCCCCCGAAGGTGCCGCGTGAGCCTCAGCAGGATGGGAACAGCGCCCGTGTCCTCTCCGGAACCCCCTGCGGCTCCCTGGCCCCCGCTGGATTACGGAGGCGGGACCCTGCTCGCCTCCGGATGCTGAATCCGGAGCCCTTTCGTGGCTTCTGGAGCCCTTTTCTGACTTCCAGGGCGACTGTGGGCAGTGCTGTACCCTGAGCCTCAGTTTTCTCTTCTGTTTTGTGGGAACTCATTCGACAGTTTCTTGAGTGCTTTCTGTGTGCCAGGCTGGGTCCCAGGCGCTGGGGATACAGCGGGTCCCTGCCCTCCTGCCGCTTTCTGGGGCAGCAGTTCGCAGAGGTTCCTTGGCTTCCTTGCCGCCCCGTGTGGAGGGGCTGGCTATGGTGCAGCAAACGGACCCCCTCCAGGTGTGACCATCAGCCTCACACTCATAATCCTCCTACCACTCCTTCTCCAG
Seq C2 exon
GGTGAACACGGCCAAAGGATTGAGTGGCGAAAATGGAAGCAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-C9orf114:NM_016390:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)