BtaINT0030479 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46538497-46540251:-
Coord C1 exon
chr22:46540199-46540251
Coord A exon
chr22:46538553-46540198
Coord C2 exon
chr22:46538497-46538552
Length
1646 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CTTTTCCATTCCCTGCTTAGGTT
3' ss Score
10.78
Exon sequences
Seq C1 exon
CCTTATAATGCCTTCCTTGCTGCAGTGAAATGGATAATGACAGAACTTGTCTT
Seq A exon
GTAAGTACAATTTGCTGCGTTTTTAAAAAAGCATTACTTTTCTGTGTTCTAAAGTGAATTGAGAGATTGTGCTTCATGCTTCCAATAACCATTAGATGATTCCTCACACTCTGTGATAAACTCACTGAACATCTCGAAATATTGAATGTAGAGTCCAAAAGATCATCTTTTAATAGGTGAATCGTGGCCACTGCTTATGCCCTTATGTCACTGTTTAGCAGACTAACAGCTTGCAGTACACAAACCAAATTTATTTATTGTGGTTACTGTTAAATTTAACATCGACGTCTGGCTGTTTTTAATGCAGCCTGGGTGGGCTGTGGTCAGAAGAACAAATTGCCAGGGCTGTCCACCGTGCTGCTTTGGATGTCTTGGCATGTGCAGGCGTGGGGGCCTGTGCAGTCATGGGTCAGGGGCTTTCTCAGGTGTGATTTAATTGTTTACCTTGTCAAATTACAGTCCTGCTGGATGCATCTGTGACTTAGGTCAAACTTGAAATGGCACAAAGATGAAAGGCTTGACTTCCAGATGAGATATTGGACACATTACAGAAACCCTGTGTCACACAGAAGGAAGGAATTCCATGGACCAGCATGGAAACCAGCTCATTCAAGCTGCACCAGACTCTCATTCTTATTTTCCCATTAAATTTCTAGTTCTGTGTGTTTAAGGCAGATTTCTTGTTATTTCACGAACGGACAATGTCTTATTTATTGCTTTAATGTAACCTATATTAAGTATAACTTCACGTGGAGAGTAAGTTCTTTGTGTATATAAGAGACAGAAGATACAGGTAATAGTGGGATTTTCATTGTGAGCTGCGAGTGATAGCAGCCATGAGCCTGAGAAGGAAATGACTAGATTTTGATCTATTTCCTTCCATTTGGTTTTACCTGGTAGCTCAGCTGGTAAAGAATCTGTCTACAATGTGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTGCCATGAAGAATTCAATGGACTGTGTAGACAATGGTATTGTAAAGAGTCAGACACGACTGAGCAACTTTCACTTTCATTGGCATTCTTTACTAGCAATTGAGAAATTATGATTTTTGTGAAGTTGCATTGGGACATAATTTCCTAAAAAGGAGTTTATTCCAATTGTCCTCACCACCTTGCCCTACACACACACACACACACTCAAATACATGTGTGACAGTGTAAATTTTGAAAGTATCCTTTATACTGCAGATCATAGTCTAAGTAGAGACTATTCCGTTTGTATTTCTGAACCAAGGTAGGAGAAGCCCTTTGAATGTGGACTTTTTACTGTGGACTCAGACTATAATAAGAAAAAAAGTTTTCCCTATAAAGCATGATATTTCTCAAATGAATCCCTGAGTCTTAAGTGAACCTGATTTCAGGGTTTGGCTGGCAATGGTGATAAAACAGTCTTTTACAAGTAAGACAAAACCTAGTGAAAATTCAGTGGTTAACTGAATGAACCATGTTGATATATCCAGATATCAGATGATGTTATTCTTTCAAATGAGGTGAGTGATGTTGAATAACACAGAATGTCACTCTTCCATTCAGGGTGTGGGTAACCAAGTAACCCTGGCTTTTCCATTCCCTGCTTAG
Seq C2 exon
GTTTCTGGTGGAATTTAACCTTTGCAGTTGGTGGCACTCAGATATGACAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117:ENSBTAT00000061412:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]