BtaINT0030483 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46488212-46488622:-
Coord C1 exon
chr22:46488512-46488622
Coord A exon
chr22:46488300-46488511
Coord C2 exon
chr22:46488212-46488299
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
GAAATATGCCTTAACTACAGTCA
3' ss Score
2.86
Exon sequences
Seq C1 exon
GTCCTTTGTCATCCAGCAGATCCCGAGCAGCAATTTGTTCATGGTGGTGGTGGACAGCAGCTGCCTCTGTGAGTCTGTGGCCCCCATCACCATGGCACCCATTGAAATCAG
Seq A exon
GTATATCCTTTTGTGTGTCAGTCCAGCCATGACTGATGAAGCTGGTAAGGGGGAGCAACAGTAGGAAACCCAGGGGAGGAATCTCAGAGAGGGAGAGATGATATTCTTTCCACTGTTAGAGAGCAGGTGTTAAGGGAACTAAGTGCCAAGTTTTGACATCTGAAATGCAGAATAAGGAAAAGGAGCGTCTTGGAAATATGCCTTAACTACAG
Seq C2 exon
TCAACATAATGAATCGCTTAAGTGTGAACGTTTAAAGGCCCAGAAGATCAGAAGGCGTCCGGAATCTTGTCATGGCTTCCATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117:ENSBTAT00000061412:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGTCATCCAGCAGATCCC
R:
CTCAGGATGGAAGCCATGACA
Band lengths:
197-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]