BtaINT0030517 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108734141-108735069:-
Coord C1 exon
chr5:108735049-108735069
Coord A exon
chr5:108734259-108735048
Coord C2 exon
chr5:108734141-108734258
Length
790 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ACCCTTCCGTGTCCCCGCAGCCC
3' ss Score
12.81
Exon sequences
Seq C1 exon
CCAAGACCGTCTTCCATCATT
Seq A exon
GTAAGTAGAGCGGCCGAGGAGCCCCAGTGCTGGGCTGGGAGGGTCCCAGGAACCTCTCTCCTTCCAGGACTCCTCAACAATGAAGGCCCCTCCCAACTTAGAGCCTTGCTCCTTAGGGAAGGGTGCGTAGCCCAGACCTCATCCCACACAATCACAGCCCTGCCCCAGGGAAAACGGAACCCTCCAGCCCTCTCCTGGGCAATAGCTCTGATGACACCAGAAGGCAGTGTCCTGTGGTCTAGAGGCCAAGGCCCCACACAGGGAACAGCTATCTGCTCACCCAGGAGTGGACATGGGTCCTCCAGGGCAACTGCCAGGCCTCTGAGTTTGCCGAGTCCTTTCTGAGCCCGCTTGAGTGACCACACAGGCCCCACTGAGGAGTCCAGGAAGTCTGGGCACTGGGCCCCCCGCCCACTTCTAAGTGACCATGGGGTCAGTTGCGGGGGGAGGCCCACGGCTTGTCCGGGAGCTGTGTCTGCAGAGCACCCGCTGGACCGTCCACAGGAAGTAGGGCTGTCGTCTCCCAGGCCCCCCACACCCTGACCTCCTCCAAGGCCCTGGACATCACCGCTGATGGTGAGGAGAGAGCCAGGCGTACCCAGGGTCACCCAGGGCGTCACTCACACTCAGCTGCTCCCTCTCCCCCGCCCCCCAAGTCCTGATGGCTTGCCATCTGCCAGTGGACGGAGCGTCTTCCTCCCGGCACAGTGACCACACTGCCCAGGCTGTCGAGGCCCACCCCACAAGGGTGACAGAGGCCCCGCGTCCACACCCTTCCGTGTCCCCGCAG
Seq C2 exon
CCCACAAGCACAAGAAGCAGGACCTGCTGCAGCCCTGTGACACCGCCTACCCCGTGTTCGTCCACCAGACGGCCGTGCGGGAGGCCAACGGCACTGTGGAGTGCCGCGCCTGCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994:ENSBTAT00000037708:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]