BtaINT0030519 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108732034-108732789:-
Coord C1 exon
chr5:108732700-108732789
Coord A exon
chr5:108732115-108732699
Coord C2 exon
chr5:108732034-108732114
Length
585 bp
Sequences
Splice sites
5' ss Seq
TATATCCTC
5' ss Score
-27.86
3' ss Seq
TAACAGTGACCTCTGCACATAAC
3' ss Score
-5.92
Exon sequences
Seq C1 exon
AGCAGCAACCTCCTGCTCCTGGTGACAGACCGCACCTGTGACTGCAGCATCTTCCCGCCAGTGCTGCGGGAGGCGGAGGAGGTCAAATAT
Seq A exon
ATCCTCTGGGGCTCCAGCCTGTGTGGGGCGGGGGAGGGTGGAGGGCAGGTCATCACCGAGGGGCTCAGATCTAGAGAGGTGGGGCCAGCCACCCTCACCACCAAGACCCTGCCCTTCCCACGGCTCCGAGGGCTGACCTCTGACCCCAGAAGGCAGTGAGGCAGCCAGTCCCACCAGAGGTTCCAGAACTGAGTCCCCAGAGGCTCCTGGGTGGCTCAGACAGTAAAGAACCCACCTGCAATGCGGGAGACCTGAGTTCGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGGAATGGCTACCCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGACAGTAAAGAATCTGCCTGCAGTGCGGAAGACCTAAGTTCGATCCCTGGGTTGAGAAGATCCCCTGGAGAAGGGAAAGGCAACCCACTCCAGTACTCTTGACTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCTACAGTCCTTGGGGTCACAGAGTCGAACACGACTGAGCGACTGTCACACACACAGGCTCCAGCGTCATCTCTGCCTCAGCTGTGTTCACCTTAACAGTGACCTCTGCACAT
Seq C2 exon
AACGCCTCTGTCAAGTGCGACAGGATGCGTTCCCAGAGGCTCCGCCGGCGCCCGGACGCCTGCCATGCCTTCCATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994:ENSBTAT00000037708:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]