BtaINT0030534 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40305138-40305736:+
Coord C1 exon
chr19:40305138-40305218
Coord A exon
chr19:40305219-40305677
Coord C2 exon
chr19:40305678-40305736
Length
459 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
ACCCCCTGCCCCAACTTCAGGTT
3' ss Score
8.72
Exon sequences
Seq C1 exon
ACAGAACACGTGCCCCCTTATGACGTGGTACCTTCCATGAGGCCCATTATCCTGGTGGGACCGTCGCTGAAGGGCTATGAG
Seq A exon
GTAGGAGCCCCTAGAGGGGCATAGGGACCAGAGGGGCCCAGACTGCCAGAAAGACTCTGTAAGGTCTTGAGACTCCAGAGACATCCCCCAGCAGGGTCTTCCCAGGGTTTCCTCCCCAGAGGGCTACAGACCTTTAGAGACCACCCCCTTCCCCAGGGGGGCCCCAACCCAACCCATGGGGAGACCCACTCAGAAGGGTCTAGTCTTCTCAAAAATACCCAGAAAAGTCCTCCTAGAGATTCTACCTGAAAGGATCTCTGGAATCAGAGACCCCAGTGGAGGCCCCTCAAACTCAGAAGGATCACTTCCTCCCCTGAACAGGGACTCATTCATCTCAGGGATTAAAGGAGAAAATGGAATGTCAGGGGGCAAATGCCTAGCAGTCTACCCTCCTTGAGAGCTTCAAACACCTGACATCTCTTCCTCCTCCTCCACCCCCACCCCCTGCCCCAACTTCAG
Seq C2 exon
GTTACAGATATGATGCAGAAAGCTTTATTTGACTTCTTGAAGCATCGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036:ENSBTAT00000002640:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]