RnoINT0028228 @ rn6
Intron Retention
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85962702-85963215:-
Coord C1 exon
chr10:85963135-85963215
Coord A exon
chr10:85962761-85963134
Coord C2 exon
chr10:85962702-85962760
Length
374 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTCTAACCCCTGCTTGACAGGTA
3' ss Score
6.6
Exon sequences
Seq C1 exon
ACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCATCGCTCAAGGGCTATGAG
Seq A exon
GTAGGAGCTCTAAAGGGTAGTACGGGCCCAGACCTTCACAGTGTGCAGCTATTCTAAAGGGCCCCAAAGCTCATATACCTTCAGGGGAAACCCTTAAGGGAGCCTGACGCGTGGGAAGTTTACTCAGGAGGGCCCAATCTTCTGAGGAAAATTCTTAAGAGCCCCTTTGGAGATGCTATGTAAGAGGCCAATGGGAATCAAGCTGTATCAGGGGCCCCAGACCCTGAGGAAGCTCCCACCCAGATTCTAGAGGCACCTTCATCTCAAAGTTTTGAAGGAAGGTGGGAAGGGGGGTCCTGATGCCCAGCAGGTGGACCTCCTGGGGGGTGGTTTCAGGGCCTGATTTCCCTTCCCCTCTAACCCCTGCTTGACAG
Seq C2 exon
GTAACTGACATGATGCAGAAGGCGTTGTTTGACTTCTTGAAGCATCGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518:ENSRNOT00000006098:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]