BtaINT0030546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33257694-33258284:+
Coord C1 exon
chr13:33257694-33257774
Coord A exon
chr13:33257775-33258225
Coord C2 exon
chr13:33258226-33258284
Length
451 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TATTGCTTGCTCAATTGCAGGTC
3' ss Score
9.09
Exon sequences
Seq C1 exon
ACAGAGCACACCCCTCCGTATGATGTGGTCCCTTCTATGCGACCTGTGGTCCTGGTGGGCCCCTCTCTGAAGGGGTATGAG
Seq A exon
GTAGGTAGCTGCCCTCTGGCGCATCCTTGACCTTGCATGCTGACCTGACCTTGCACACCTCCCTCTCCTGACTCTTGAACTGGGAAAAAAGCTGGTGGCAGCAAAGCACGTTGTTTTCAAGCCACGGGGTACATTGCTACAGTTCTGTTCCGTTTTGTTGCCTTGGAGATGTATGCATACCACAGTTGACTCAGTCTGGGGAGAGAGTGTCAAATGGAGAATGATGGAGGCCCCTTGCAATGTTGTTAACAGTCCCTCCAAGAGTGAGTTTGGGGAACTTTGTCTTTTTTCATTGTTAATATATCAAAGCTCAGCCACAGAAAAAGGGAGCGACCCTCACATGCTACTTTTTCCCAATGGGACTCCTGGATTTTTAACATTAAGAGGAATAAGACTGTTTTATCATAATTAGTAATGTTTTTTTCATGTCTTATTGCTTGCTCAATTGCAG
Seq C2 exon
GTCACAGATATGATGCAAAAAGCACTGTTCGATTTTTTAAAACACAGATTCGAAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000:ENSBTAT00000029344:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development