GgaINT0097892 @ galGal4
Intron Retention
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19022090-19022549:-
Coord C1 exon
chr2:19022469-19022549
Coord A exon
chr2:19022149-19022468
Coord C2 exon
chr2:19022090-19022148
Length
320 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTTGTTTCTTTGCTTTTAGGTA
3' ss Score
11.38
Exon sequences
Seq C1 exon
ACAGAGCACATCCCTCCCTATGATGTAGTGCCTTCTATGAGACCTGTAGTTTTAGTGGGACCTTCTTTGAAGGGATATGAG
Seq A exon
GTAAGAGATTGTTGCAATTAATTTTATTTTGCCAAAAATGTTTTGCATCATGTGGGTTTGAATGTTTGGAGGTAATTAAGCTGAATAATATAATTTGCATCATAGACAAAAATATAGACTGTTTATACTTCAATGAGATGTGTGATTGCATACATTTTATTTCATATCCAAATTCAGATTAGGACAAAATTACTTACATTCTTGTCATATTATTCAGATATAAGTTTTACTGTCAACTTCAATATGTTTTTCTAAATTGTTAGTATCAACTTTTATGAGTTTCCTATCTAGTTAGTAATTTCTTGTTTCTTTGCTTTTAG
Seq C2 exon
GTAACAGATATGATGCAAAAAGCATTATTTGATTTTTTAAAACATAGATTCGAAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591:ENSGALT00000013988:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(40.5=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]