MmuINT0027914 @ mm9
Intron Retention
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14893189-14893747:+
Coord C1 exon
chr2:14893189-14893269
Coord A exon
chr2:14893270-14893688
Coord C2 exon
chr2:14893689-14893747
Length
419 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AATTTGTTATTCAATTACAGGTC
3' ss Score
8.15
Exon sequences
Seq C1 exon
ACAGAGCACACTCCTCCTTATGATGTGGTACCTTCCATGCGACCAGTGGTGCTGGTGGGCCCGTCTCTGAAGGGGTATGAG
Seq A exon
GTGAGTTTGGGGTGCCACTCTCTGTAGCACACTTGGCCGACGACTGTTAACATGCTCTGTGACTATACCCTCCCTATTCAATGGACTGAGTTTGACCTTGTCTCAGAGCATGCTTTGCTGGCTGTGGTATTCGTTTCCTAAAGGTTGCCTTGGGTAGTCCTGCTAGCTACAACCCACCACGTGCAGGAAATAGTATCAAATGGAGAATACCTGCAAGCCCTTGCATAGCAATTGCTTGCCATTAAAATATCCTACGCTCAGAAATTTTACCTTGTCACTTCATTAAGGTTTAAAAACAGGAAGTATGGTAACCCCATTTTTATGTGTTAACGGAGCAAACTAAAATCAGTTCTCATGATCAGTAACAATTTTTTATCCTCAGATTTTTTTTCACATTTTAATTTGTTATTCAATTACAG
Seq C2 exon
GTCACAGATATGATGCAAAAAGCACTGTTTGATTTTCTAAAACACAGATTTGAAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-Cacnb2:NM_023116:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.2=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: