BtaINT0030568 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44403446-44408397:+
Coord C1 exon
chr2:44403446-44403568
Coord A exon
chr2:44403569-44408266
Coord C2 exon
chr2:44408267-44408397
Length
4698 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TCGTTGTTTCTGTGTTCCAGAAA
3' ss Score
9.75
Exon sequences
Seq C1 exon
TCTAAACCCGTAGCATTTGCTGTGAAGACGAATGTGAGCTACTGTGGTGCCTTGGACGAGGATGTGCCTGTTCCAAGCACGGCCATCTCCTTTGACGCGAAGGATTTTCTACACATAAAAGAG
Seq A exon
GTAAATGTAGGATGCATGCCTTAACCTGCCACACAATCAAGGGCAGGAATCAGCTCTGAGCCAAACTAAACGGAGAGGAGCCCTGAGGAGCTGCCAGTGTTTTGCCTCATTTAATTGGAAAGGCTTCCAAATCCATCCCTTCTCACTGAGATTTAGAAAACTGAGGTTGTTGCTTGCATTATCACGCATTTAAAATAAAACTAGCTGTTGGAGAGACAGTGGATTGGAGTGGGAGAAGTCTGGAATCAGGGAGACCGTTAGAGCTGTTCTAGATGAGGGATAATGGGATTGAGCCATCCTGGTGCTACTGAGATGGAGAAAACTATTTCTCTCCACATTTGAGGTATACTGTGGGAATTCAATGAAGAGTGCTGGTGATGGACCTTGTGTAGGAGCTAAGATTGAGGGAGACATCAAAGATGATCAAGGAAATCAAGGTTTATGAATTGAGCAGCTGGGATGGATATGACTAGGGTGGGGTGAGGACAGATGGGAAGGGAATTTGGGAGTGGACATATCAAAGGAGAAATGAAGTCGGAAGTTAGATGTGAGAATCTGGAGCTCAAAGGAAGGGGTTGGGCCAAAGATATACATTTGGATCGTTAGTTTATCCAGGTGGCATGTAAAGCTGTGGTAATGAATGAAGTCATCTAAAGACAGAGGAGAAGGAGGAGAGAAGGCAGCCCTGGATCAAATCCAAAGGAATTCCATCCTGCAAAGGTGGGGTGCATAAAAAGACTCAGCAAATAAGGAAGCTGAAAAGGAGAAGCCTGAGATATGGGAGGAGAACTAGGGCAGAGCAATTCATGGACATCAACAGAGAAGAGTGTGTTCAAAAGGAGGAAGCAACCAGCTGCAGCCAATGTTGTGACATGTCACCTAAGGTGAGGAGAAAGGAATGGACGTTGGGTTGGCAACACAGTGGTCAGCAGCGTGGACGTCGCTGGGACCATTGTCTGGAGTTTTGGAGATGAAAGCTGGATGCAGTGTGATGAGGAGAGAAGGGGAGTTAGGAAGTATATTTAGCAAGCACAGACCATGCTTCCAAGGGAGTTGACACTGACCAGGCAGTAGACTGAAGAGGGTATGAAGTCAAAAGAGGTTTTCTTTCAAGATGGGAGCTATCAGAATATGTGTCCGTGCCTGTTAACAGAGAGAAAAGGAGAGAGATTGATGGGAAAGGTGGGAAGTTTTTGGTAGTCAGGAAGCCTGGGATCCAGACCCCAAGTGATGGGGCAGACCTTTGATAGGAAGGGGAACACTTAGTCATTATAACAGATAGGGAAAAAGATGAGTTTAGGTACTCATAGCTTTAGTTATGAGAAACTGAGGAAGCATCGAGATGACCTCTTCTGCTTTTTTGATCATGTATAACATGAGGATATTCATATTTGCCCTAAAGACAAGGACTCTCAACCCAAAACATGTGCCCTAACACCTGAGTGGTTAGGTTGACTTTGTGTCATCATTCTCATCAAAAACAACCAAACCATATTCATTAGTTGCTCATTCCCATTGTTTCCAAGGAGAAGCAGCACTTGAAACAGTAAAAGAAGTCCTCAGATATTCCAAGCATACTACTCACACCTACATCCCCACCTTGATGCATTTTATTGTTTTTCCTCCATTCCATCAATCATCTCCATTTGTCCTGTTGGTTGCTTTTTTGATCTATATGCTCCTCGACCAGTGACTTTCCCTTGCCTTGGCAGTTTGATGTATGATGTTGAGCTGGTAATCCTATATGGATTAGAGCCACTTGTTTTCAGATTTTGAGATCTCAAATAAGGAAACATCTTAGGAAGAGAAAGTGCTCATCATTTTCAGGAAAGCAAAATGAGAAGAATTGGAATAGCACTAACGTGACCTTGCCAGGAAGCTGGCATGTACTCCCAGAACATCAATGCACGTGAACATATTTCTATAATCGAGTTGTAGCCTTTCCTCTAATCCATAACCTCGAAGGCCATTTGGTATGCTCTATTTTCTGTACTTTATCAGTAATGAAAAGCTTAAAAGTAGAGAAAAGCTACAGCAGTCCTTATCACATACACCAAATGACCAGTGATTTAAGCCCTTGAATGTACAATGTAACTTTCCTCTAAGTGGCTCAAAGGACTTTCATTAACATTGAGTCAGATTTTCACTGTGCTTTAGCTATTTCCTAGAAGAAAGTAAATGGCACCCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGAAGGCTGCAGTCCATGGGGTTGCTAAGAGTCGGACACGACCGAGCGACTTCCCTTTCACTTTTCGCTTTCATGCATTGGAGAAGGAAATGGCAACCCACCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTAGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCAACTTAGCAGCAGCAGCAGCAGAAGAAGAAAGTAAAACATCTTGGGAAGTTACATCAACTATTTCAGGAACCCCTTCAAGATCATTTGGGTAGCAGTTAGTAAGTTAGTGTTCCGGTGGGTTAATTTGATTTCAGGAGGTAACTTAAGCTGTGGGAAACTATGACTCACTGTCTGTTTTGTCCCCACCACAGTAAAACTTAAATTCCAAATCCATGCACCAAACATTCTAACGTGGTCCCATTGCCTTTTGTTAATTCCAAAATAAATAGACCTGTTATTTCAGGAGTGTTATCCTTAAATAAAAGATGGAAAGATGGGAGAAATTGAGGCCTAGACTGTTCAAGATTTTATATTAGGTTGACTCACATTTCTTCAGTGCCGGCTCAGACTGCTTGCCATGTGTGCTTTGTGTAGGAGCTGTGTGCAAAACAAAGGCCAAATCTCTAACTCATATCTTTTTGCTTTTGAGTATATAACTGTTATTCAGAATTACTCAGAGCCACCCGAAATTTCGTGCTTTGATGATTCAGTGGAAATATCCATTTCTCCTTCCCAGCATGTCAATGTCATATACAAATTCTACTGTCCTGTGAGCTAAGCAAAATATACCATATAGAGTTACGCTTTGAAAAAATGAGATGCTTCCTGGATCAAAGAGAGAGAGAGTTACCTTGTCCGACATTAATAAAGACAATAAAGGAAGTTTTTGGAATTATCTCTGGAGGATGTAAACAGTAGGACTAATGTCTGTTTTCTGGAAATCACCTAGCTGAAACCTTCCCTTGAGGCAGGTAGCTTGGATTAAACATGCCTTCTGCCCTAAGATTTGTTAACTACAAACTGGTACTTGCCATGGGTACTTTACTGACTGAGCCGCCAGGGAAGCCCAAAAGAGTCGGACACGACTTAGCGACTGAACAAGAGCAACACGGGCGCTTGCCATCTGCCTCTGTCCGGATTAAGTCATGTGCTGCTGCAGCTGCTGATTTTCAACACCCTCTGAAAGTGGAGAGCAGAAACGAGGCACTCTGTGCTCTGGGAAAAACTGCCATAACTGGTCTTCAGATAGTTAAGTATTTTTCAGGAGCCAATTTTATGAGCCCCATTCTTATATCTCCTCATATTTAGAAAAGCACTAAATTCCTTCTTAATGATGACTGCTCCTTATGACTAGCAGAAAGCTTCTGTTTGTGCTTGATTGAATGTATTCTTTCTGACCTTCCTCCACTGCCTCTTGGAGCAGTTTCTCAGAACTATCTGAAATGCTGTCTCCTGGGCTATAGTCCTCATTTTGCCCCCAAATAAAACTTAACTTGCAGCTGTCATATTGTGCATTTTTTTTTAAAAGTCAGCAAACTCAGCAAATCTGTCATTACAAATGCAGTTGTGCTGGCCCATCAAATAGGACCATGTTCACCCCATATTGACTGAAGCCTTTGTGTGGGTTTGTTTTCCAAAGTTACATGTCTTGGAACTTTATTTAAATGGAAATTCCTTCATTCCTATTGGATTTCAGGTCACTTCAAGATTACTTCAAAAATTCCACTTATGTAAAATATGCTTAGTCTTTGTGAGAGTAGGCTTATTTTTCTTCAGGTAATAAGATGGACCTTGATTTGCAAATCTGTATTTGGAAGATTATATTGTTTTTCCCCAGAGAGAGTAAAATACAGATACTACGGTGGAATTTTTACCTCAAAGCTTTTGATAAATAACAGACTGTTCAGTGTATTTCATCTTAGACTTGTCTGTCTTGTCTTCCAGAGTTCTAATTACAGTGGTGCATTTTTATCCTTATAAAATCTATTCCCGAAGATGTGGCAAGAGCTTCTTGACAAGGACCAAAGGAATCCGAACATTAAGACCTGACTTTAGCCCAGGGATTAGCAAACGGTGTCCCATGGGCTGAAACCCAGCCTGCTGTCTTTCAGAAAGAAAAGGTTTCTTGAAGCACAGCCGTGGTTACGTGTTTACATACTGTCTGTGGCTGCTTCCACACTACAGCAGAAGGTTACAGTGGTTGCATCAGAGTCCATATGGCCTGCAGACCCTCAAGTATTAATTATCTTGGCTTTTGGACTAGAAAGCTTGCTTTATTCTTTGGACACCACCCCCCAGATATATATAATATGGTATAATATACTATAAATAGTGTTTGTATATATAACATGGTACAGTATAATGTTATATAACATAGTGCCTCCTCTTTTGGCCCCCTGAAATGAATAAATGTGAAGATAAGTGAATTGATAGCATCGTTGTTTCTGTGTTCCAG
Seq C2 exon
AAATATAACAATGATTGGTGGATAGGAAGGCTGGTGAAAGAAGGCTGTGAGATTGGCTTCATCCCAAGTCCGCTGAGATTGGAGAACATACGGATTCAGCAGGAACAGAAAAGGGGCCGTTTTCACGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297:ENSBTAT00000002971:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.227
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
A:
NA
C2:
PF0001823=SH3_1=PD(51.2=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]