GgaINT0045676 @ galGal3
Intron Retention
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36974852-36977520:-
Coord C1 exon
chr7:36977398-36977520
Coord A exon
chr7:36974983-36977397
Coord C2 exon
chr7:36974852-36974982
Length
2415 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GAAACCTTTCTGTGTTCCAGAAA
3' ss Score
8.06
Exon sequences
Seq C1 exon
TCCAAACCAGTAGCGTTTGCTGTTAAGACCAATGTGAGTTACTGTGGAGCTCTGGATGAAGATGTCCCTGTCCCAAGCACTGCCATCTCTTTTGATGCGAAGGACTTCCTACACATTAAAGAG
Seq A exon
GTAAAAACATGTAGCAGTTATTCCCTTTAAGAAGCCGGGGGCTGCAGTTGGAGCAATCATGTCTGAACTGAACCGGAGAAAACTGAAGACCAAGAACTGAGCAGCAGCAGGAGAGTACAGCACGCAGATGGGATAGTGGTGCTGTGTGACCCTTCATCCTTTCCACAGTTGAAATCAAGTTTGTGATGGATCTGATGTAACAGAAAGGGGCTCTGTTCATCAGGGAGTTTAGTAGCAGCAGTTTACACCTGGTCTTTGTAAAGCACTTGGGTAGGCCTGTAAGGGAATGAGGCAGAATAACACAAGCATAAAACAAAACGCTGACGAGGCTGCAGGACAAAAATATATAAAAATAAGGAAAAAGGAATGGGAATAAACAAGCCCTGAATATGGCTTTTGTAGAGAAAAAGACTCTTGTTGCACGTTGAGCATGTTTTCTGCAATTAGTTATCTGAAGTGAGCCCTTCAAATCTGCATCAACTCCCGTTGTTCTGTAGATTTGTACTTAGACTTGCAGCTTGCAAATATGTTTTTTTATCTCTGCATTCTGTGTGTTTATTTTTGGGTGTTCGGTACTAATTTTTCCCTTTCTTTGAACGTTAGCCCATCATTGCTTCAAAGCTCTCATCTCCCCGAGACTGAGCATGTTTGGGAGGGAAACACCTGCTGCTTCCTCTCTGGAGACAGAGATTGGTGGTAGAATGGGGGAGTTGTGCTTGAAGCTCTTTCTCCCTGGACACAGGAGGGGCAGTTGATTTGCATGTTCCCTTTTCTGAGTTTGCTGGAAACAGATGGAAGGTTGATTTTTTTTTTTTTCAAACATTATTTTATTTTATTTTTAGTTGGTTTTGTTGTATTGTTTAGGTTTTCTTTAATACATTGCTGTGGAGATGTCCTTAAGCCCATGTTGAGGAAGCAGAGCACTGTGAAGTCTGAACCTGCCTCTCTCTGTGTGGAGCTGCCTTTCCCCTGCGCTGAGTTCCCAGGAATGTGCTCCTTTCTGTCTGGCACCACACCTGAGCTCCCCGTCATGTACCCACCCTGAAACCATCTCCCCATCAGGAAAGTGTCCTTTGCTGCACTCAGAGCAGAGCTGCCTGCAAACAGCTGCACCCGTTACAGCAGAGATCACTCCTCAGCTGCCTTCCCTGCCATGTTCCCTTTCACACCAGGAGCATACCGTATCTGGTGTGCTGTCTTTCTAGTTTGCACATTGCAGCTGTTCAGGTAGCTCTGTGCATCAGCATTAGCACAGTATTTGCTCTTGATTTCTCAGCATGTGGCTGCATGCATTGTCTGGCCACAAATGTGCTAAGCTCCTGTTGGTGCTGCCCTGTACATTGTTCCTGGGCAGTGTCACAAGTCCATGTCTTGGCTTTCTGTGAGTGTTCCTCTGAGATCCAAATGGCCAGGATAACACCCCCACCGCACATAAACCATCTGGCTTACAGGTGTTCACCTGCTCTGCTAGGGATTCAGCATTTCTTTGTTAATGCTGAAGCCTTCAGCCTGCCTGAAGCTGTAACTCAGTACAATTTGGGCAGCGGTTCGTGGAAAAAGGCTTTGCAGAATTTGTTCTTCAGTGATCTGATGGGTTTGCTTGGCCAGCAATAGCCATGATTTAGATTAGATCCAGATTTTAGAATAACACCAGGCCAGGTAGAAGTCAGGTCACCCTGCTGACAAGATGAAACATCAGCAGTAACTGATGAGTTGCTGTATTGAGAGTGTGTCCTGTATGTCTCCTACCTCTCCTACCAGACTATATGTTATGTGCTTATTTCAGAGAAGTGCAACAGTTACTGACAATATGGAAGGAATTATGGGCATGGCAACCAGTAGGAATGAACTGTAGTCCTCCCACATGCTAAATGCAGAGAATAGCTTATGGGAGGTAATGACCTAATGCAAATTGCCCTGCTTCCCTTACTGCATTGTTGTCAGTTGCATTGTTCAGCTATTCTCAGCATAGCACTGATTCTGACCTCTTGTCTTAGAGGTGTCACTCAGAACTCCATGTCCTGGTAGTAGAAGGAAAGTTCCCATGTTCGAGCCATACATTCAGAACCAAAATCAAGTAGTTAATCATCAGAGGGCTCTGATTGGAGAATCATGCCATCACAGAGAGGTGTGGGTTAGAAGGGACCTTAAAGCCCATCCAGTTTCATCCCCCTGCCATGTGCAGGGATGCCTCCCACTGCACCGGGCTGTCCAGGGCCCCCTCCAGCCTGGTTTAAACCCGTTCATCAGAAATAGCTCATGCTCCTTACATCACCATCACCCTCAGCCCCAAAGTTATGATATCAGAGAAGTCACAGCAGGTTGTTTTGGTGCTGGTATGGAGTTAAGGATTGCAGATAAGATAGTAGGGAGCTCAGGACGTGAAGCAAGGCCAGAAACCTTTCTGTGTTCCAG
Seq C2 exon
AAATACAATAATGACTGGTGGATAGGGAGACTGGTGAAGGAGGGCTGCGAAATTGGTTTCATTCCGAGCCCGCTTAGACTGGAGAATATCCGCATCCAGCAGGAGCAGAAGAGAGGACGTTTCCATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000037762:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3),PF0308010=DUF239=PU(26.3=75.6)
A:
NA
C2:
PF0001823=SH3_1=PD(51.2=50.0),PF0308010=DUF239=FE(36.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]