BtaINT0031084 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103459793-103460119:-
Coord C1 exon
chr11:103459980-103460119
Coord A exon
chr11:103459890-103459979
Coord C2 exon
chr11:103459793-103459889
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTCCGTTTTTTCTTTTAGCCA
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATATATGCTTGAAGGAGGTGACGTCGATGGCTGACAGTCTGTATAACATTCGGCTTCTGAGAGAATTCTCCAATGAATATCTTAACAAATGCTTTTATCTCACCCTAGAAGATATGCTGTATGCTCCTTTAGTGTTGAAG
Seq A exon
GTAAAAATCAATTATCAGAAGCACATTTTTAAAACCACTTGGGAATAAGCTATTTACTATGTCCTTGATCTTTTCCGTTTTTTCTTTTAG
Seq C2 exon
CCAAATGTTATGGTTTTTATTGCTGAGCTGTTCTGGTGGTTTGAGAACGTCAAGCCAGATTTTGTCCAGCCCAGGGATGTTCAGGAACTGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(31.5=100)
A:
NA
C2:
PF0030726=CH=PD(9.6=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTGAAGGAGGTGACGTC
R:
AAACCACCAGAACAGCTCAGC
Band lengths:
178-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development