RnoINT0028772 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3391193-3391516:-
Coord C1 exon
chr3:3391377-3391516
Coord A exon
chr3:3391290-3391376
Coord C2 exon
chr3:3391193-3391289
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGTTGTGTGTTTTGTTTTAGCCA
3' ss Score
9.58
Exon sequences
Seq C1 exon
ACATTTGCCTGAAGGAGGTGCCATCGATGGCTGACAGCCTGTATAACATCCGGCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACCCTGGAGGATATGCTGTATGCTCCCCTAGTGCTGAAG
Seq A exon
GTAAAGCTCCCATCAGACATGCACGTAAGGCCAGCTGCCTTTGAGCAGGTACTTACTGTGCCTGGGTTGTTGTGTGTTTTGTTTTAG
Seq C2 exon
CCAAACGTTATGGTTTTTATCGCTGAGCTCTTCTGGTGGTTTGAGAACGTCAAACCCGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(50.0=89.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTCTGAGGGAGTTTTCC
R:
TCTCGGGGCTGAACAAAATCG
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]