MmuINT0028485 @ mm9
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25800462-25800793:-
Coord C1 exon
chr2:25800654-25800793
Coord A exon
chr2:25800559-25800653
Coord C2 exon
chr2:25800462-25800558
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTTGTGTGTTTTGTTTTAGCCG
3' ss Score
9.65
Exon sequences
Seq C1 exon
ATATCTGTCTGAAGGAGGTGCCATCAATGGCTGACAGCCTCTATAACATCCGCCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACGCTGGAGGATATGCTGTATGCCCCCCTAGTGCTGAAG
Seq A exon
GTAAGCCTGCCACCAGACAGACAGACACGCACTTAGAGCCAGCTGGCTTTGAGCAGGTACTTACTGTGCCGGGGTTGTTGTGTGTTTTGTTTTAG
Seq C2 exon
CCGAACGTTATGGTTTTTATCGCTGAGCTCTTCTGGTGGTTTGAGAACGTCAAACCAGATTTTGTTCAGCCCCGAGATATTCAAGAGCTGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933-Camsap1:NM_001115076:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(50.0=89.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGCCTTCTGAGGGAGTTT
R:
TCGGGGCTGAACAAAATCTGG
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: