BtaINT0031111 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17686362-17687094:+
Coord C1 exon
chr7:17686362-17686669
Coord A exon
chr7:17686670-17686994
Coord C2 exon
chr7:17686995-17687094
Length
325 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CTGACACCCTCTGCTCCCAGGCT
3' ss Score
8.25
Exon sequences
Seq C1 exon
GCTGGTCCAGGAGGAGGTGACCCCCAGCCCCCCTGCACCCACAGCTCCTACGGCCTCTGCTGCAATCCCAGCCCCAGCTGCCCGGGCCCCTGCTGAGGAGGAGGTGGGCCCCCGGCGGGGGGAGTTCACACGGCTGGAGTATGAACGCCGGGCCCAGCTGAAGCTGATGGACGATCTTGATAAGGTGCTGCGGCCCCGGGCAGCAGGGAGTGGGGGGCCGGGCCGCGGCGGTCGGAGGGCCCCTCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCCTGGCTCGGAGCCCAGCCCGTGGACTGCTGG
Seq A exon
GTGAGGCCCCCAGGGGGCAAGTGGGGCGGCTTGGGGTATATACACAGGGCTGCGGTGTGGGGATTCAAGGCTTCCAGAAGGACGTGGGGGCCACAGCAGGGTAAAGGGTACTGGCTCAGAGTTCTCTCCACAGCTTAATAGGTCAGGCACTGCTTCCCTACAGCCTGGCTTAGGGGGGACGGGGGATAGTCAGTGTGGGGTGAGGGTCTTAGGCAGGGTTGACCCCCATGTTCCTTCTCCAACTGGCCAGGTCAGGTCCCCTAGGCATACGTGGAGGTAAGGGGGTTTGGTGGGGGGTGCTTGACCTGACACCCTCTGCTCCCAG
Seq C2 exon
GCTCTCGGCTCAGCAAAATCTACTCCCAGTCCACCCTGTCTCTGTCCACGGTGGCCAACGAGGGCCCCAGTAACCTTGGTGTGAAGAGGCCCACGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCAGGAGGAGGTGAC
R:
GACAGGGTGGACTGGGAGTAG
Band lengths:
347-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]