MmuINT0002330 @ mm9
Intron Retention
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3606504-3607890:+
Coord C1 exon
chr8:3606504-3606820
Coord A exon
chr8:3606821-3607790
Coord C2 exon
chr8:3607791-3607890
Length
970 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ACTGGTACTGTCTATCCTAGGTT
3' ss Score
8.71
Exon sequences
Seq C1 exon
GCTGGCTCAGGAGGCTCCAGGCTTGGCCTTTACAACTCCTGTTGTAGCCTCTGCGGCTCCAGTGGCCACCTTGGCTCCTACTACCAGAGCCATGGCCCCAGCTGAGGAGGAGGTGGGCCCCCGGCGGGGGGACTTCACAAGACTTGAGTATGAACGCCGGGCACAACTGAAACTGATGGATGACCTTGATAAGGTGCTACGGCCCCGGGCCTCAGGGACCGGGGGACCAGGGCGGGGCGGGCGCAGGGCCACCCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCTTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
Seq A exon
GTGAGGACCCTGTTGGAGGGGCCCTATGATTGTGGAGAGAGGGAGTGTCTGGTGGCATGCAGTGATGGGGCAGGAATTTGGAGTGGGCATGAGTTCCAGTGTGGTGAGGGTAACTTCCTTCCTTGGCTGGATAGTGAGGAACTCTCTTGGATATTTGAGGATGCTACTAAACAGTGCTCCCTTCCCTGTAGGTATGTGGACAAGAATGCCAAACTCAGGGCTGGGTTTGTCTGGAATGGATGAGGCCCTGGGTTAAATCCCAGAGCTGTATAAGAAAAATTGCCATATTAAGGTAGACAGGTTGGCACATGCCTGTCATTGCGATACTCAGGAGTCTGAAGCAGGAGGATTTTGAGTTTGGTCCTAAACTGGCTGTTGAGCAGCTTCTCTGCCCATTTAGGCTACACCTTGAGGTCCTGCACCAAACACTGAAACTAAGGACACATAAACACACACACACACACACACACACACACACACACGAATAAGTTCAGAGTGGTGGTGGTGGCTCTTGGTAGAGTACTTGCCTACCCTAGCGTACACGAAACTTCAGGTTCCATCCCCAGTTTTAACCAGGAATGGCAGTTATAGGCCTATAACTCCAGCACTGAGAAAGTAGAGACTGGAGACTTGGTCATCCTCAACAAATAGGAAGTTTGAGGCCAGCCTGGGCTATAGAAGACCCATCTTTAAAAAGTAAAAGCCAGACTGGAGAAACGACTCAGTGGTTAAGAGCACCTATTGCTCTTCCAGAGGTCCCGAGTTCAGTTCTTAGCAACCACATGTGACCGACTCACAACCATCTGTAATTGAGTCCAGTGCCCCCCTCTGCTGTCATAAGACAGATACTCGTATAAATAAACAAAACTTAGCAGGCAATCACGAAAGGCTGAGAGGGTCTCGGGAATGCCCATGGGCGTTAATGGAGGTAAAGGCCTTAGGGATAACTGACTGGTACTGTCTATCCTAG
Seq C2 exon
GTTCACGGCTCAGCAAGGTCTATTCCCAGTCCACGCTGTCCCTATCTACGGTGGCCAACGAGGCTCCCAATAACCTTGGTGTGAAGAGGCCCACCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-2310057J16Rik:NM_027171:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=NA C2=0.765
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=0.9)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGGCCTTTACAACTCCT
R:
CGTAGATAGGGACAGCGTGGA
Band lengths:
348-1318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: