RnoINT0028797 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2154776-2156159:+
Coord C1 exon
chr12:2154776-2155092
Coord A exon
chr12:2155093-2156059
Coord C2 exon
chr12:2156060-2156159
Length
967 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CTGGTACTGTCTCTTTCTAGGCT
3' ss Score
10.84
Exon sequences
Seq C1 exon
GCTGGCTCAGGAGGAGGCTCCGGGCTTGGCCCTTTCAGCTCCCGTAGCCCCTGCTGCTCCGGTGGCCACCTTGGCTCCTGCTACCCGAGCCATGGCCCCAGCTGAGGAAGAGGTGGGCCCCCGACGTGGGGACTTCACAAGACTTGAGTATGAGCGTCGGGCACAACTGAAGCTGATGGATGACCTTGATAAGGTGCTACGGCCCCGGGCCTCAGGGACCGGGGGACCAGGGCGGGGCGGGCGCAGGGCCACCCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCTTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
Seq A exon
GTGAGGACCCTGAGAGGAGGGGCCCTATGGTTATGGAGAAAAGGGAGCGGCTGCTGGGATGCAGTGATGGGGCAGGGATTTGGAGTGGGCAGGATTTGCAGGGTGGTGAGGGTACCTTCCGCCCTTGGCTGGATAGTGAGGAACCCCCTTGGATGTGTGAAGATGCTACTAAATAATGCTCCCTTCCCTGTAGGTATGTGGATAGGAATGTGATGCTCAGGGCTAGGTTTGTGTGGAGTGGATGAGGCCCTGAGTTAAACCCCCAGCACTGTAGAATCGCCATATTAAAGCAGACATCTGCCTGTCATCGCCATACTCAGGAATCTGAAGCAGGAGGATTTTGAGTTTGGTCCTACTGTGCATTTGGTCCTATAGAGCATTCTGGGCCCATTTAGTCTACACACTGAGATCCTGCATCAACACTGAAACCAAGGGACACAGGCGTGCGTGCGCACACACACAAATATATGAAAAGGTTCAGAGGGTGGTGGCAGCTCAGTTGGCAGAGTGCTTGCCTAGCGTACACGAAACTTCAGGTTCCAGCTCCAGTATTAACCAGGTATGGTGTTATGGGCCTTTAATCCTAGCACTCAGAGAGTAGAGACTGGAGATTTGGGAAATCAAGGTCATCCTCAGCAGATAGAAAGTTTGAGGTCACCTGGGCTGAAGATCTTTAAAAAGTAAAAGCTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGACCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCCTCTATAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCATATAAATAAAAGAATTAAATGTTAGCAAGCCAACACAAAAAACCAAAAGTGTCTCAGGAGTGCCCATGGGCATTAGTGGAGGCTAGGGGCCTCAGGGATAACTGACTGGTACTGTCTCTTTCTAG
Seq C2 exon
GCTCCCGGCTCAGCAAGGTCTATTCCCAGTCCACACTGTCTCTGTCTACTGTGGCCAATGAGGCTCCCAATAACCTTGGTGTGAAGAGGTCCACGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=NA C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGGCTCCTGCTACCC
R:
TGGACCTCTTCACACCAAGGT
Band lengths:
343-1310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]