BtaINT0031116 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17679512-17679838:+
Coord C1 exon
chr7:17679512-17679634
Coord A exon
chr7:17679635-17679742
Coord C2 exon
chr7:17679743-17679838
Length
108 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
AACGTCTCCCTGCTCCGCAGACC
3' ss Score
9.77
Exon sequences
Seq C1 exon
GGAGCCCATCTAGCTGTCATTGATGCCCTCATGGTTGCCTTCGCCTTCGAGTGGACAAAGACACTGCCTGGTCCCTTGGCCCTAGCCAGCTTGGAGCACAAGCTCCTTTTCTGGGTAGACACG
Seq A exon
GTAGGTGGGGGTTGGGCCAAGATGGGGGGGCGGGGGGCGGGGGGGTGCAGCCGGAGGCGGCCAGGACCGGTCCAGTGACTAGAGTGCTAACGTCTCCCTGCTCCGCAG
Seq C2 exon
ACCATCCGGCGGCTGCAGGAGAAGACGGAGCAGGAAGCTGCCCAGAGAGCTACTCCAGCGGCCCCTGCAGATGGGGTGGCCCCAGCGCAGCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.573
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCATCTAGCTGTCATTG
R:
CCACCCCATCTGCAGGGG
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]