MmuINT0002335 @ mm9
Intron Retention
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3598686-3598988:+
Coord C1 exon
chr8:3598686-3598808
Coord A exon
chr8:3598809-3598892
Coord C2 exon
chr8:3598893-3598988
Length
84 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GACTTCTCTCTGACCCCTAGACT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GGAGCCCACCTAGCTGTCATCGATGCTCTCATGGTTGCCTTCTCATTTGAGTGGACAAAGACACTACCTGGTCCCTTGGCTCTGAGCAGCTTGGAGCACAAACTCCTTTTCTGGGTAGACACA
Seq A exon
GTAAGTAGGGTGGGCCAGGCCATGTGGAGTGGAGACAATGACGTTAGCCAAGTGACCAGGCACTGACTTCTCTCTGACCCCTAG
Seq C2 exon
ACTGTTCGGCGGCTGCAGGAGAAGACAGAACAAGAAGCAGCCCAGCGTGCATCTCCTGCAGCCCCTCTGGATGGGGCCTCTCCTGCCCAGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-2310057J16Rik:NM_027171:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCACCTAGCTGTCATC
R:
CTGGGCTGCTTCTTGTTCTGT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: