HsaINT0086975 @ hg38
Intron Retention
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7606271-7606571:+
Coord C1 exon
chr19:7606271-7606393
Coord A exon
chr19:7606394-7606475
Coord C2 exon
chr19:7606476-7606571
Length
82 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
ACCCCCTCCCTGCCCTCCAGACC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GGAGCCCACCTAGCTGTCATTGATGCCCTCATGGCTGCCTTTGCCTTCGAGTGGACAAAGACCCTGCCAGGTCCCTTGGCCCTGACCAGCTTGGAGCACAAGCTGCTTTTCTGGGTGGACACG
Seq A exon
GTAGGTGGGGTTGGGCCTGGGGTGGGTTCGGGGACCAGCATCGTCCAGTGGCCAGACCACTGACCCCCTCCCTGCCCTCCAG
Seq C2 exon
ACCGTCCGGCGGCTGCAGGAGAAGACCGAGCAGGAAGCGGCCCAGCGAGCCTCTCCAGCAGCCCCTGCAGACGGGGCGGCCCCGGCGCAGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826:ENST00000160298:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCACCTAGCTGTCATTGA
R:
CTGCTGGAGAGGCTCGCT
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development