BtaINT0031265 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17817630-17817840:+
Coord C1 exon
chr23:17817630-17817669
Coord A exon
chr23:17817670-17817771
Coord C2 exon
chr23:17817772-17817840
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCCACCCCTTTCCCTCCAGGAG
3' ss Score
11.36
Exon sequences
Seq C1 exon
GGAACTGGATGAAGCCAACTACGCTGAGCTTCTCCAAGAG
Seq A exon
GTGAGGGGAGGCCATGGGGTTGGGGGTTCGGGGCAGTATGTGTGGGTTGGGGTGTGAAGGAACGCTCTGGACCGTGTCCCTCTCCCACCCCTTTCCCTCCAG
Seq C2 exon
GAGAGCATCTCTGAGACCGACATAGACCAGGACTTCGTACGTTTGTTTCACATAGTGGCCGGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066:ENSBTAT00000004690:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATGAAGCCAACTACGC
R:
CTCTCCACCGGCCACTATGT
Band lengths:
106-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]